View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_555 (Length: 230)

Name: NF11453A_low_555
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_555
NF11453A_low_555
[»] chr6 (1 HSPs)
chr6 (23-214)||(22082702-22082893)
[»] chr4 (1 HSPs)
chr4 (23-214)||(37617082-37617273)
[»] chr3 (5 HSPs)
chr3 (23-214)||(19768009-19768200)
chr3 (118-214)||(45456360-45456456)
chr3 (23-89)||(29199652-29199718)
chr3 (23-71)||(12572413-12572461)
chr3 (23-71)||(13548877-13548925)
[»] chr5 (2 HSPs)
chr5 (118-214)||(40164812-40164908)
chr5 (23-89)||(4351620-4351687)
[»] chr1 (2 HSPs)
chr1 (118-214)||(6921653-6921749)
chr1 (118-214)||(38238129-38238225)
[»] chr2 (1 HSPs)
chr2 (118-210)||(7827613-7827705)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 22082893 - 22082702
Alignment:
Q  23 cttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacata 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22082893 cttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacata 22082794  T
Q  123 taagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22082793 taagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 22082702  T

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Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 37617082 - 37617273
Alignment:
Q  23 cttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacata 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37617082 cttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacata 37617181  T
Q  123 taagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 214  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37617182 taagcttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaatgagatacataacaccat 37617273  T

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Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 19768200 - 19768009
Alignment:
Q  23 cttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacata 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768200 cttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacata 19768101  T
Q  123 taagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 214  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19768100 taagcttaagtgttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaatgagatacataacaccat 19768009  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 45456360 - 45456456
Alignment:
Q  118 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 214  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  45456360 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccat 45456456  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 29199718 - 29199652
Alignment:
Q  23 cttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctca 89  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  29199718 cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca 29199652  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 12572413 - 12572461
Alignment:
Q  23 cttacataaacaaaacacataatgcagtataacacacactgacagccac 71  Q
    ||||||||||||||||||| ||||| |  |||||||||||||| |||||    
T  12572413 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 12572461  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 13548877 - 13548925
Alignment:
Q  23 cttacataaacaaaacacataatgcagtataacacacactgacagccac 71  Q
    ||||||||||||||||||| ||||| |  |||||||||||||| |||||    
T  13548877 cttacataaacaaaacacacaatgccgcgtaacacacactgactgccac 13548925  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 40164908 - 40164812
Alignment:
Q  118 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 214  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  40164908 acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacgctatatagcaatttgaaaatgagatacataacaccat 40164812  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 4351687 - 4351620
Alignment:
Q  23 cttacataaacaaaacacataatgcagtataacacacactgacagccacg-aagaaaaagctccctca 89  Q
    ||||||||||||||||| | ||||| |  |||||||||||||| |||||| || ||||||||||||||    
T  4351687 cttacataaacaaaacaaacaatgccgcgtaacacacactgactgccacgaaaaaaaaagctccctca 4351620  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 6921749 - 6921653
Alignment:
Q  118 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 214  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6921749 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccat 6921653  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 38238129 - 38238225
Alignment:
Q  118 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 214  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  38238129 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccat 38238225  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 7827613 - 7827705
Alignment:
Q  118 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataaca 210  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  7827613 acatataaacttaagtcttcttaattcaaatacaatctaaaaacatatcaactaccaacactatatagcaatttgaaaatgagatacataaca 7827705  T

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