View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_556 (Length: 230)
Name: NF11453A_low_556
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_556 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 27004885 - 27004691
Alignment:
| Q |
19 |
tgagcattaccagatattgttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgggagtgtggcatagagaag |
118 |
Q |
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| T |
27004885 |
tgagcattaccagatattgttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtgagtgtggcatagagaag |
27004786 |
T |
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| Q |
119 |
ccatattggaacatgtgagagaggtcaaggtggatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttg |
213 |
Q |
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| T |
27004785 |
ccatattggaacatgtgagagaggtcaaggtggatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttg |
27004691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 33397498 - 33397618
Alignment:
| Q |
38 |
ttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgggagtgtggcatagagaagccatattggaacatgtgag |
137 |
Q |
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| T |
33397498 |
ttttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgag |
33397597 |
T |
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| Q |
138 |
agaggtcaaggtggatttagt |
158 |
Q |
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| T |
33397598 |
agaggtcaaggttgatttagt |
33397618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 36876569 - 36876695
Alignment:
| Q |
23 |
cattaccagatattgttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgggagtgtggcatagagaagccat |
122 |
Q |
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| T |
36876569 |
cattaccggttattgttttggggaaactgatatccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagccaat |
36876668 |
T |
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| Q |
123 |
attggaacatgtgagagaggtcaaggt |
149 |
Q |
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| T |
36876669 |
gttggaacatgtgagagaggtcaaggt |
36876695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 37579845 - 37579753
Alignment:
| Q |
121 |
atattggaacatgtgagagaggtcaaggtggatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttg |
213 |
Q |
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| T |
37579845 |
atatttgaacaagtcagagaggtcaaggttgatgatatagtggtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttg |
37579753 |
T |
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