View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_562 (Length: 230)

Name: NF11453A_low_562
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_562
NF11453A_low_562
[»] chr7 (11 HSPs)
chr7 (1-225)||(35938762-35938986)
chr7 (1-184)||(35981486-35981669)
chr7 (1-184)||(36002898-36003081)
chr7 (1-184)||(36222014-36222197)
chr7 (3-184)||(32727043-32727224)
chr7 (8-184)||(36218030-36218206)
chr7 (7-184)||(35957465-35957642)
chr7 (3-184)||(35976920-35977101)
chr7 (3-184)||(35998332-35998513)
chr7 (3-183)||(35946258-35946438)
chr7 (5-143)||(35951937-35952075)
[»] chr1 (2 HSPs)
chr1 (3-164)||(18117552-18117713)
chr1 (3-184)||(18125185-18125366)
[»] chr2 (1 HSPs)
chr2 (1-184)||(26329056-26329239)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35938986 - 35938762
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  35938986 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttgtaagagattctgagatatggaatttagaacagaagcaaaatgata 35938887  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaggttacaccttccgcac 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  35938886 ttttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatatcccaaagattacaccttccgcga 35938787  T
Q  201 ttatagatgcagtattgctaaactt 225  Q
    |||||||||||||||||||||||||    
T  35938786 ttatagatgcagtattgctaaactt 35938762  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 35981669 - 35981486
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||| |||| |||| ||||||||| |||||||| |||| |||| | || ||||||    
T  35981669 aaaacattaggaagttccctgttttcaaagcttgatttaaataagtgggtatttgtaagggattctgagttatggaatctagagcagaagaaagatgata 35981570  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    |||||||||| || || ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  35981569 ttttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaag 35981486  T

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Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 36003081 - 36002898
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||| |||| |||| ||||||||| |||||||| |||| |||| | || ||||||    
T  36003081 aaaacattaggaagttccctgttttcaaagcttgatttaaataagtgggtatttgtaagggattctgagttatggaatctagagcagaagaaagatgata 36002982  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    |||||||||| || || ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  36002981 ttttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaag 36002898  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 36222014 - 36222197
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||  |||||||   |||||| ||||| |||||||| | | ||  |||||    
T  36222014 aaaacattaggaagttctctgttatcaaaatttgatttaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgata 36222113  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    ||||||||||| ||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||| | ||||||||||    
T  36222114 ttttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaag 36222197  T

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Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 32727224 - 32727043
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    ||||||| |||||||  | || ||||||| ||||||||||||||||  |||| | ||||||||||||||||||||||||||||||| | || ||||||||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatatt 32727125  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    ||||||||| | || ||||||||||||||||| |||||||| |||||||| ||||||||||  |||||||| ||||||||||    
T  32727124 ttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaag 32727043  T

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Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 36218030 - 36218206
Alignment:
Q  8 taggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatattttacc 107  Q
    |||||||||||||||| ||||||||||||||| ||||||||  |||| |||||||   ||||||||||||||||||||||| | || |||||||||||||    
T  36218030 taggaagttctctgttctcaaaatttgatttagataagtggttatttgtaagagaccatgagatatggaatttagaacagaagaaagatgatattttacc 36218129  T
Q  108 tgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    |||  |||||||||||||||||||||| ||||| ||  |||| || |||||||||| ||||||| | ||||||||||    
T  36218130 tgctttaaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttccttgtatcccaaag 36218206  T

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Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 35957642 - 35957465
Alignment:
Q  7 ttaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatattttac 106  Q
    |||| ||||||||| || ||||| |||||| ||| ||||||||||||| | || || |||||||| |||||||||||||| | |   |||||||||||||    
T  35957642 ttagcaagttctctcttctcaaactttgatataagtaagtgggaatttgttagggactctgagatgtggaatttagaacaaaagattaatgatattttac 35957543  T
Q  107 ctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    |||| ||||||||||| ||||||||||| ||||| ||  |||| || |||||||||||||||||||| ||||||||||    
T  35957542 ctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttatttttccctttatcccaaag 35957465  T

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Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 35977101 - 35976920
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||||||||||||| || ||||| |||||| |||  |||||||||||  | || || |||||||| |||||||||||||| | | || ||| ||||    
T  35977101 aacattaggaagttctctcttctcaaactttgatataagcaagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatggtatt 35977002  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    |||||||| ||||||||||||||||||||||| ||||| ||  |||| || ||||||| |||| ||||||| ||||||||||    
T  35977001 ttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaag 35976920  T

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Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 35998513 - 35998332
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||||||||||||| || ||||| |||||| |||  |||||||||||  | || || |||||||| |||||||||||||| | | || ||| ||||    
T  35998513 aacattaggaagttctctcttctcaaactttgatataagcaagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatggtatt 35998414  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    |||||||| ||||||||||||||||||||||| ||||| ||  |||| || ||||||| |||| ||||||| ||||||||||    
T  35998413 ttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaag 35998332  T

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Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 35946438 - 35946258
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||| ||||||||| || ||||| |||||| ||| ||||||||||||  | || || |||||||| |||||||||||||| | | || |||||||     
T  35946438 aacattagcaagttctctcttctcaaactttgatataagtaagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatgatatc 35946339  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaa 183  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||  | || || ||||||||||||||||| || | |||||||    
T  35946338 ttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgcttatttttctctttttcccaaa 35946258  T

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Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 35952075 - 35951937
Alignment:
Q  5 cattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatttt 104  Q
    |||| |||||||| || || ||||| || ||||||| ||||||||||||| | ||||| ||||  || ||||||||||||||   | || ||||||||||    
T  35952075 cattgggaagttccctcttctcaaacttcgatttaagtaagtgggaatttgtcagagactctgctatttggaatttagaacaacagaaagatgatatttt 35951976  T
Q  105 acctgcactaaaattaagctatgatcaaataccatccta 143  Q
    |||||| || ||||||||||||||||||||  |||||||    
T  35951975 acctgccctgaaattaagctatgatcaaatgtcatccta 35951937  T

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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 18117713 - 18117552
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||| ||  |||||| |||||||| |||| ||||||||| | |||||||||||||    
T  18117713 aacattaggaagctgtctgttttcaaaatttgatttaaataaatgggaacttgcaagagactctgagatgtggactttagaacaaaagcaaaatgatatt 18117614  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgctta 164  Q
    ||||||||||||||||||||||||||| |||| |||||||| || |||||||| ||||||||    
T  18117613 ttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgctttgctta 18117552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 18125366 - 18125185
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    ||||||||||||||| || || |||||||||||||||||||  |||  |||| |||||||||||||| | ||||||||| |||||    || ||||||||    
T  18125366 aacattaggaagttccctattctcaaaatttgatttaaatacatggatatttgtaagagattctgagctgtggaatttaaaacagcaaaaagatgatatt 18125267  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || ||||| || ||||||||||| ||||| ||||| ||||    
T  18125266 ttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcctaaag 18125185  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26329056 - 26329239
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||| ||||||||||| || || ||||||||||||||| |||||||| | ||  | || || ||  | ||||||||||||   || |   || ||||||    
T  26329056 aaaacgttaggaagttcactcttctcaaaatttgatttagataagtggaagttcgtcagggactcccaaatatggaatttaaggcaaaacaaagatgata 26329155  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaag 184  Q
    |||||||||  || || ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| | ||||||||    
T  26329156 ttttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaag 26329239  T

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