View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_564 (Length: 230)
Name: NF11453A_low_564
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_564 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3302893 - 3302670
Alignment:
| Q |
1 |
tgacaaaggtgaatttcctaaacagttcatggatgtattgtctgtcaagtttaagctgttaaaagtgcttgattttgagaagtcttcattgaattctatt |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |
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| T |
3302893 |
tgacaaaggtgaattgcctaaacagttcatggatgtattatctgtcaagtttaagcttttaaaagtacttgattttgagaagtcttcattgaattttatt |
3302794 |
T |
|
| Q |
101 |
cctgataacttgggaaatcttttccacctaaggtacttgaacttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttag |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3302793 |
cctgataatttgggaaatcttttccacctaaggtacttgaacttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttag |
3302694 |
T |
|
| Q |
201 |
aaaccttggatctaaggcaaactc |
224 |
Q |
| |
|
|||||||||||||||| ||||||| |
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| T |
3302693 |
aaaccttggatctaagacaaactc |
3302670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 3321182 - 3320962
Alignment:
| Q |
2 |
gacaaaggtgaatttcctaaacagttcatggatgtattgtctgtcaagtttaagctgttaaaagtgcttgattttgagaagtcttcattgaattctattc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||| || ||||| |||||||||||||| |||| ||||||| ||||| |
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| T |
3321182 |
gacaaaggtgaatttcctaaacagttcattgatggattatctgctaagttcaagcttttgaaagtacttgattttgagaattctttgttgaattgtattc |
3321083 |
T |
|
| Q |
102 |
ctgataacttgggaaatcttttccacctaaggtacttgaacttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttaga |
201 |
Q |
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||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||| ||||| |||||||| ||||||||| | |||||||| |
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| T |
3321082 |
ctgataacttgggaaatctttacctcctaaggtacttgaacctgagtcatacaaaagttacggtacttccgagatccattggtaatctagtcaacttaga |
3320983 |
T |
|
| Q |
202 |
aaccttggatctaaggcaaac |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3320982 |
aaccttggatctaaggcaaac |
3320962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3309581 - 3309360
Alignment:
| Q |
1 |
tgacaaaggtgaatttcctaaacagttcatggatgtattgtctgtcaagtttaagctgttaaaagtgcttgattttgagaagtcttcattgaattctatt |
100 |
Q |
| |
|
||||| || |||||||||||| |||||||| |||| ||| |||| |||||| ||||| || ||||| ||||||||| |||| |||| ||||||| |||| |
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| T |
3309581 |
tgacagagatgaatttcctaagcagttcatagatggattatctgccaagttcaagcttttgaaagtacttgattttcagaattctttgttgaattatatt |
3309482 |
T |
|
| Q |
101 |
cctgataacttgggaaatcttttccacctaaggtacttgaacttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttag |
200 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||| | |||||| ||||||||| | ||||||| |
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| T |
3309481 |
cctgataacttgggaaatcttttcctcctaaggtacttgaacctgagtcatacaaaagttacggtacttccgaaatccattggtaatctagtcaacttag |
3309382 |
T |
|
| Q |
201 |
aaaccttggatctaaggcaaac |
222 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
3309381 |
aaacattggatctaaggcaaac |
3309360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 3356313 - 3356096
Alignment:
| Q |
2 |
gacaaaggtgaatttcctaaacagttcatggatgtattgtctgtcaagtttaagctgttaaaagtgcttgattttgagaagtcttcattgaattctattc |
101 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||| || | ||| ||||| ||||||| || ||||||| ||||| |
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| T |
3356313 |
gacaaaggtgaattgcctaaacatttcatggatgaattatctgtcaagttcaagcttttgagagtacttgactttgagagttcagttttgaattatattc |
3356214 |
T |
|
| Q |
102 |
ctgataacttgggaaatcttttccacctaaggtacttgaacttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttaga |
201 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||||||| |||||| ||| ||||| || ||| ||||||| || || ||||| ||||| || ||||| |
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| T |
3356213 |
ctgataacttggggagtcttttccacctaaggtacttgaacctgagtcgtacaaaagtcacagttattccaagttctattggtaacctaatcaatttaga |
3356114 |
T |
|
| Q |
202 |
aaccttggatctaaggca |
219 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3356113 |
aaccttggatctaaggca |
3356096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 3220374 - 3220196
Alignment:
| Q |
46 |
caagtttaagctgttaaaagtgcttgattttgagaagtcttcattgaattctattcctgataacttgggaaatcttttccacctaaggtacttgaacttg |
145 |
Q |
| |
|
|||||| ||||| || ||||| |||||||||||||| ||| ||||||| | ||||||||||||| || || ||||||||||||| |||| ||||| || |
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| T |
3220374 |
caagttcaagcttttgaaagtacttgattttgagaaatctcggttgaattatgttcctgataacttagggaaccttttccacctaacgtacctgaacctg |
3220275 |
T |
|
| Q |
146 |
agtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttagaaaccttggatctaaggcaaactc |
224 |
Q |
| |
|
|||||||| ||||||| |||| |||| |||||||| ||||| ||| | |||||||||||||||||| |||||||||||| |
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|
| T |
3220274 |
agtcatacgaaagttaaggttattcctagatccattggtaagctactgaacttagaaaccttggatttaaggcaaactc |
3220196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 3202123 - 3202340
Alignment:
| Q |
2 |
gacaaaggtgaatttcctaaacagttcatggatgtattgtctgtcaagtttaagctgttaaaagtgcttgattttgagaagtcttcattgaattctattc |
101 |
Q |
| |
|
||||||| |||||| ||||| | |||||||||| |||||||| ||||| ||||| || |||||||||||||| ||||| || ||||||| | ||| |
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| T |
3202123 |
gacaaagatgaattatctaaagatttcatggatggattgtctgcaaagttcaagcttttgaaagtgcttgatttcgagaactccctgttgaattttgttc |
3202222 |
T |
|
| Q |
102 |
ctgataacttgggaaatcttttccacctaaggtacttgaacttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttaga |
201 |
Q |
| |
|
||||||||||||| ||||||||||| || | ||||||||||||||| | || ||||| || |||||||| ||||| || ||||||||| | |||||||| |
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|
| T |
3202223 |
ctgataacttggggaatcttttccatctgaagtacttgaacttgagccgcacaaaagtcacagttcttcctagatcaattggtaatctagtcaacttaga |
3202322 |
T |
|
| Q |
202 |
aaccttggatctaaggca |
219 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
3202323 |
aagcttggatctaaggca |
3202340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 3197276 - 3197093
Alignment:
| Q |
41 |
tctgtcaagtttaagctgttaaaagtgcttgattttgagaagtcttcattgaattctattcctgataacttgggaaatcttttccacctaaggtacttga |
140 |
Q |
| |
|
||||||||||| ||| | ||||||| ||||| |||| | | |||| ||||||| | ||||||| |||||||||||||| || | |||| |||||||| |
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|
| T |
3197276 |
tctgtcaagttcaagtttgtaaaagttcttgactttgggcattctttgttgaattatgttcctgagaacttgggaaatctactcaatctaaagtacttga |
3197177 |
T |
|
| Q |
141 |
acttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttagaaaccttggatctaaggcaaactc |
224 |
Q |
| |
|
|| | |||||||| ||||||| ||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||||| |
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|
| T |
3197176 |
acctaagtcatacaaaagttatggttcttcctagatctatcggtaacctaccgaacttagaaacattggatctaaggcaaactc |
3197093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 3722723 - 3722778
Alignment:
| Q |
2 |
gacaaaggtgaatttcctaaacagttcatggatgtattgtctgtcaagtttaagct |
57 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||| |||||| ||||| |
|
|
| T |
3722723 |
gacaaaggtgaatttcctaaacggttcatggatggattatcttccaagttcaagct |
3722778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 3722789 - 3722872
Alignment:
| Q |
136 |
cttgaacttgagtcataccaaagttacggttcttccaagatccatcggtaatctaattaacttagaaaccttggatctaaggca |
219 |
Q |
| |
|
||||||| |||||| ||| ||||| || ||| ||||||| || || ||||| ||||| || |||||||||||||||||| |||| |
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|
| T |
3722789 |
cttgaacctgagtcgtacaaaagtcacagttattccaagttctattggtaacctaatcaatttagaaaccttggatctatggca |
3722872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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