View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_567 (Length: 229)
Name: NF11453A_low_567
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_567 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42551402 - 42551624
Alignment:
| Q |
1 |
tgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactataggcatctttgtggctaatatcctcaatttcatgtttgcgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551402 |
tgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactataggcatctttgtggctaatatcctcaatttcatgtttgcgaaa |
42551501 |
T |
|
| Q |
101 |
atgaagaacggggagggatggcgctacagtttgagttttgcttctatccctggaataatgtttaccttaggtgcaatgttccttcccgactcaccgagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551502 |
atgaagaacggggagggatggcgctacagtttgagttttgcttctatccctggaataatgtttaccttaggtgcaatgttccttcccgactcaccgagtt |
42551601 |
T |
|
| Q |
201 |
ctttgattgagcgtggtcaaaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42551602 |
ctttgattgagcgtggtcaaaat |
42551624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 42518653 - 42518521
Alignment:
| Q |
1 |
tgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactataggcatctttgtggctaatatcctcaatttcatgtttgcgaaa |
100 |
Q |
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|||||| ||||| || |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||||||| | ||||| || |
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| T |
42518653 |
tgctccctacaagtatagaggagctcttaacatgatgttccaattggcaataactataggcatttttgtggccaacatcctcaattatttttttgcaaag |
42518554 |
T |
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| Q |
101 |
atgaagaacggggagggatggcgctacagtttg |
133 |
Q |
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| T |
42518553 |
atgaagaacggggaaggatggcgatacagtttg |
42518521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 1240331 - 1240190
Alignment:
| Q |
1 |
tgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactataggcatctttgtggctaatatcctcaatttcatgtttgcgaaa |
100 |
Q |
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|||||| ||||| || |||||||||||||| |||||||| |||||| |||| ||||||||||| |||||||| || |||||||||| | ||||| || |
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| T |
1240331 |
tgctccctacaagtatagaggagctcttaacatgatgttccaattgtcaataactataggcatttttgtggccaacatcctcaattatttttttgcaaac |
1240232 |
T |
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| Q |
101 |
atgaagaacggggagggatggcgctacagtttgagttttgct |
142 |
Q |
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| T |
1240231 |
atgaagaacggggaaggatggcggtacagtttgggatttgct |
1240190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 18234791 - 18234585
Alignment:
| Q |
17 |
agaggagctcttaatatgatgtttcaattggcaatcactataggcatctttgtggctaatatcctcaatttcatgtttgcgaaaatgaagaacggggagg |
116 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| | ||||| | |||||||| ||||| || | |
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| T |
18234791 |
agaggagctcttaacatgatgttccaattggcaatcacaataggcatctttgtggccaatattctcaactatgtgttttctaaaatgaaaaacggtgaag |
18234692 |
T |
|
| Q |
117 |
gatggcgctacagtttgagttttgcttctatccctggaataatgtttaccttaggtgcaatgttccttcccgactcaccgagttctttgattgagcgtgg |
216 |
Q |
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||||||| ||||||||| |||| ||| | |||||| ||||||| ||| | ||||||||| || ||||||||| | || ||||||||||| ||||| || |
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| T |
18234691 |
gatggcgttacagtttgggtttggctgccgtccctgcaataatgattatcacaggtgcaatctttcttcccgacacgccaagttctttgatcgagcgcgg |
18234592 |
T |
|
| Q |
217 |
tcaaaat |
223 |
Q |
| |
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||||||| |
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|
| T |
18234591 |
tcaaaat |
18234585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41971961 - 41971890
Alignment:
| Q |
1 |
tgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactataggcatctttgtggc |
72 |
Q |
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|||||| ||||| || |||||||||||||| |||||||| |||||| |||| ||||||||||| |||||||| |
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| T |
41971961 |
tgctccctacaagtatagaggagctcttaacatgatgttccaattgtcaataactataggcatttttgtggc |
41971890 |
T |
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