View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_582 (Length: 229)
Name: NF11453A_low_582
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_582 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29660661 - 29660440
Alignment:
| Q |
1 |
tatgttactacattcaatgaaaattagaggacatgactaatcctaattcccaggctgaatcccttattaacagggcactattgttaaacatgacagacaa |
100 |
Q |
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| T |
29660661 |
tatgttactacattcaatgaagattagaggacatgactaatcctaattcccaggctgaatcccttattaactgggcactattgttaaacatgacagacaa |
29660562 |
T |
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| Q |
101 |
ccaatgaatatgaactgaatctgattatggaactgcatacatcatcataatcaatgaaaataaaagctattaagctaaacattttgaatgaaaatatttt |
200 |
Q |
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| T |
29660561 |
ccaatgaatttgaactgaatctgattatggaactgcatacatcatcataatcaatgaaaataaaagctattaagctagacattttgaatgaaaatatttt |
29660462 |
T |
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| Q |
201 |
gtcaaaaataagatacctttaa |
222 |
Q |
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| T |
29660461 |
gttaaaaataagatacctttaa |
29660440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 33186465 - 33186552
Alignment:
| Q |
8 |
ctacattcaatgaaaattagaggacatgactaatcctaattcccaggctgaatcccttattaacag-ggcactattgttaaacatgacagaca |
99 |
Q |
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| T |
33186465 |
ctacattcaataaaaattggaggaca-----aatccgaatgccgaggctgaagcccttattaacagtggccctattgttaaacatgacagaca |
33186552 |
T |
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