View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_584 (Length: 229)
Name: NF11453A_low_584
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_584 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 44683107 - 44682879
Alignment:
| Q |
1 |
tcaatcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatt |
100 |
Q |
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| T |
44683107 |
tcaatcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatt |
44683008 |
T |
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| Q |
101 |
tattgaaaaacgatccatttggtcaaaagatgaacaacttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtttgatgcacaca |
200 |
Q |
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| T |
44683007 |
tattgaaaaacgatccatttggtcaaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtttgatgcacaca |
44682908 |
T |
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| Q |
201 |
acttatcacattagctaaaatttatgtga |
229 |
Q |
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| T |
44682907 |
acttatcacattagctaaaatttatgtga |
44682879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 44659930 - 44659774
Alignment:
| Q |
33 |
aatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggtcaaaagatg |
132 |
Q |
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| T |
44659930 |
aatactgcacatgtggtagtgttgaagcacgttactgttgaaatgctcgactcatttgtccgtgaatttactgaaaaacaatccatttggtataaagatg |
44659831 |
T |
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| Q |
133 |
aacaacttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtt |
189 |
Q |
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| T |
44659830 |
aacaatttcagcctccatgcattgcgaacgacgttggttctagaaattgtgcttgtt |
44659774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 44640090 - 44640000
Alignment:
| Q |
33 |
aatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggt |
123 |
Q |
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| T |
44640090 |
aatattgcacatgtggtggtgatgcaacatgttactattgaaatgttggactcatttgttgatgagtttactaaaaaacgagcaatttggt |
44640000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 44668402 - 44668333
Alignment:
| Q |
34 |
atattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttat |
103 |
Q |
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| T |
44668402 |
atattgcacatgtggtggtgatgcagcacgttactgttgaaatgttggactcctttgttgatgagtttat |
44668333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 29341825 - 29342009
Alignment:
| Q |
5 |
tcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttatt |
104 |
Q |
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| T |
29341825 |
tcgtagatggaatttagcaagcaatgaaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttgttcatgaatttatc |
29341924 |
T |
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| Q |
105 |
gaaaaacgatccatttggtcaaaagatgaacaacttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtt |
189 |
Q |
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| T |
29341925 |
caaaaacgatcgatttggtctaaagatggacactttcaacctccatgtattgcaagcgacgttggttctaaaaattgtgcttgtt |
29342009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 29357852 - 29358045
Alignment:
| Q |
5 |
tcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttatt |
104 |
Q |
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| T |
29357852 |
tcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttgtttgtgaatttatc |
29357951 |
T |
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| Q |
105 |
gaaaaacgatccatttggtcaaaagatgaacaacttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtttgatgcaca |
198 |
Q |
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| T |
29357952 |
caaaaacgatcgatttggtctaaagatggacaatttcagcttccatgtattgcaagcgacgttggttctagaaattgtgcttgttcgatacaca |
29358045 |
T |
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