View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_593 (Length: 227)

Name: NF11453A_low_593
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_593
NF11453A_low_593
[»] chr6 (5 HSPs)
chr6 (23-227)||(25988481-25988685)
chr6 (38-120)||(25320891-25320973)
chr6 (38-120)||(26150584-26150666)
chr6 (168-227)||(25320975-25321034)
chr6 (168-227)||(26150668-26150727)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 25988481 - 25988685
Alignment:
Q  23 atccttgtttgtcttagtttcctttgttgaggggttcgtagctccacattttcggttaccaactgtccacttcacgacattatttgtcaagaaggtctat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  25988481 atccttgtttgtcttagtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtctat 25988580  T
Q  123 aatggacatccaatgtgcttccttacttatcgctatttgcggttagcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988581 aatggacatccaatgtgcttccttacttatcgctatttgcggttagcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagctt 25988680  T
Q  223 caact 227  Q
    |||||    
T  25988681 caact 25988685  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 25320891 - 25320973
Alignment:
Q  38 agtttcctttgttgaggggttcgtagctccacattttcggttaccaactgtccacttcacgacattatttgtcaagaaggtct 120  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  25320891 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 25320973  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 26150584 - 26150666
Alignment:
Q  38 agtttcctttgttgaggggttcgtagctccacattttcggttaccaactgtccacttcacgacattatttgtcaagaaggtct 120  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  26150584 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 26150666  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 25320975 - 25321034
Alignment:
Q  168 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagcttcaact 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25320975 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaacttgagcttcaact 25321034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 26150668 - 26150727
Alignment:
Q  168 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagcttcaact 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26150668 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaacttgagcttcaact 26150727  T

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