View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_595 (Length: 227)
Name: NF11453A_low_595
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_595 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 34519930 - 34520055
Alignment:
| Q |
102 |
ctatctgtgatccagttcaactgtagttgaaaacctattaaatcataatcttgaggtctcactgattagatcttcggtttgaatttcaaaccattagatt |
201 |
Q |
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| T |
34519930 |
ctatctgtgatccagttcaactgtagttgaaaacctattaaatcataatcttgaggtctcactgattagatcttcggtttgaatttcaaaacattagatt |
34520029 |
T |
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| Q |
202 |
gaataattaccaaggatgattctcag |
227 |
Q |
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| T |
34520030 |
gaataattaccaaggatgattctcag |
34520055 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 34519834 - 34519882
Alignment:
| Q |
6 |
acttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
54 |
Q |
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| T |
34519834 |
acttttagggattaaaaccaatgattcgttaatttcagagactagctaa |
34519882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 34532215 - 34532313
Alignment:
| Q |
133 |
aacctattaaatcataatcttgaggtctcactgattagatcttcggtttgaatttcaaaccatt-----agattgaataattaccaaggatgattctca |
226 |
Q |
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| T |
34532215 |
aacctattaaatcataatcttgaagtttcactagttccatattcggtccgaatttcaaaacattgcagaagatagaataattaccaaggatgattctca |
34532313 |
T |
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