View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_608 (Length: 225)
Name: NF11453A_low_608
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_608 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 44683384 - 44683180
Alignment:
| Q |
21 |
gtgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctc |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44683384 |
gtgataactcgtttgaaatacatgagtgcgatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctc |
44683285 |
T |
|
| Q |
121 |
ccatcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatcaact |
220 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44683284 |
ccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctact |
44683185 |
T |
|
| Q |
221 |
acgtg |
225 |
Q |
| |
|
||||| |
|
|
| T |
44683184 |
acgtg |
44683180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 44660238 - 44660035
Alignment:
| Q |
22 |
tgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44660238 |
tgataactcgtttgaaatacatgaatgcactatctagagatgttgacatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
44660139 |
T |
|
| Q |
122 |
catcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatcaacta |
221 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44660138 |
catcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctacta |
44660039 |
T |
|
| Q |
222 |
cgtg |
225 |
Q |
| |
|
|||| |
|
|
| T |
44660038 |
cgtg |
44660035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 29357572 - 29357775
Alignment:
| Q |
22 |
tgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
121 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
29357572 |
tgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctcc |
29357671 |
T |
|
| Q |
122 |
catcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatcaacta |
221 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
29357672 |
aatctttctttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaacta |
29357771 |
T |
|
| Q |
222 |
cgtg |
225 |
Q |
| |
|
|||| |
|
|
| T |
29357772 |
cgtg |
29357775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 29341545 - 29341748
Alignment:
| Q |
22 |
tgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
121 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
29341545 |
tgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctaccatcacaggtagccgtagtgggcatgctcc |
29341644 |
T |
|
| Q |
122 |
catcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatcaacta |
221 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
29341645 |
aatcttactttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaacta |
29341744 |
T |
|
| Q |
222 |
cgtg |
225 |
Q |
| |
|
|||| |
|
|
| T |
29341745 |
cgtg |
29341748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University