View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_615 (Length: 224)
Name: NF11453A_low_615
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_615 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 11319556 - 11319753
Alignment:
| Q |
13 |
caatctcaacttcttgcaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11319556 |
caatctcaacttcttgtaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
11319655 |
T |
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| Q |
113 |
aaataactccatttatcctagtctagaccctcaacaacagttacatcaccacccctataatacacaatcaaatctcttagaaactgacccccatgatg |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11319656 |
aaataactccatttatccttgtctagaccctcaacaacagttacatcaccacccctataatacacaatcaaatctcttacaaactgacccccatgatg |
11319753 |
T |
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Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 18132826 - 18133023
Alignment:
| Q |
13 |
caatctcaacttcttgcaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18132826 |
caatctcaacttcttgtaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
18132925 |
T |
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| Q |
113 |
aaataactccatttatcctagtctagaccctcaacaacagttacatcaccacccctataatacacaatcaaatctcttagaaactgacccccatgatg |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18132926 |
aaataactccatttatccttgtctagaccctcaacaacagttacatcaccacccctataatacacaatcaaatctcttacaaactgacccccatgatg |
18133023 |
T |
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Target: scaffold0121 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 42342 - 42145
Alignment:
| Q |
13 |
caatctcaacttcttgcaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342 |
caatctcaacttcttgtaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
42243 |
T |
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| Q |
113 |
aaataactccatttatcctagtctagaccctcaacaacagttacatcaccacccctataatacacaatcaaatctcttagaaactgacccccatgatg |
210 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42242 |
aaataactctatttatccttgtctagaccctcaacaacagttacatcaccacccctataatacacaatcaaatctcttacaaactgacccccatgatg |
42145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 25434434 - 25434237
Alignment:
| Q |
13 |
caatctcaacttcttgcaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25434434 |
caatctcaacttcttgtaagcaatttcctcctctactttccaccacattctgaaactattcttagcatattttttatctgtcattataccctctacttca |
25434335 |
T |
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| Q |
113 |
aaataactccatttatcctagtctagaccctcaacaacagttacatcaccacccctataatacacaatcaaatctcttagaaactgacccccatgatg |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
25434334 |
aaataactccatttatccttgtctagaccctcaacaacagttacatcaccacccctataatacacaatccaatctcttacaaactgacccccatgatg |
25434237 |
T |
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