View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_619 (Length: 223)
Name: NF11453A_low_619
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_619 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 10368474 - 10368546
Alignment:
| Q |
24 |
ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg |
96 |
Q |
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| T |
10368474 |
ctttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg |
10368546 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 10368608 - 10368662
Alignment:
| Q |
158 |
agaaaacaaatctgaatctttgaactccattcttcttcttctccttcatctcagt |
212 |
Q |
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| T |
10368608 |
agaaaacaaatctgaatctttgaactccattcttcttcttctccttcatctcagt |
10368662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 36116814 - 36116774
Alignment:
| Q |
167 |
atctgaatctttgaactccattcttcttcttctccttcatc |
207 |
Q |
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| T |
36116814 |
atctgaatctttgaactccattattcttcttctccttcatc |
36116774 |
T |
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