View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_62 (Length: 420)
Name: NF11453A_low_62
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 37308703 - 37308289
Alignment:
| Q |
1 |
acaatagtaagccattttttagtttcattgagtcaataagagacagaaaatcaaaatggcttctgaagtaaagcaagaaggataaaaagaaattaactca |
100 |
Q |
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| T |
37308703 |
acaatagtaaaccattttttagtttcattgagtcaataagagacagaaaatcaaaatggcttctgaagtaaagcaagaaggagaaaaagaaattaactca |
37308604 |
T |
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| Q |
101 |
aataaccttaaacttgatttctagactctatatataattgattcacgtatactcgtaactttgatattatccttgattgtattatacacgttattgctaa |
200 |
Q |
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| T |
37308603 |
aataaccttaaacttgatttctagactctatatatatttgattcacgtatactcgtgactttgatattatccttgattgtattatacacgttattgctaa |
37308504 |
T |
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| Q |
201 |
tgatagcacaaaagtttatttttctagaaaaaattgtatatttattttgatgttagaaattgcttagtacaccttgcaacgccaatcctgtcggcagctg |
300 |
Q |
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| T |
37308503 |
tgatagcacaaaagtttatttttctagaaaaaattgtatatttattttgatgttagaaattgcttaatacaccttgcaacgccaatcctgtcggcagctg |
37308404 |
T |
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| Q |
301 |
tgaaaccatttcgcattgtgccactccataactacaacaaacaccataatttccatttttaattataatccaagtcaatgcatatgtacttcgttgactt |
400 |
Q |
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| T |
37308403 |
tgaaaccatttcgcattgtgccactccataactacaacaaacaccataatttccattttaaattataatccaagtcaatgcatatgtgcttcgttgactt |
37308304 |
T |
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| Q |
401 |
ccctatcataaaaat |
415 |
Q |
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| T |
37308303 |
ccctatcataaaaat |
37308289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 37284542 - 37284504
Alignment:
| Q |
377 |
aatgcatatgtacttcgttgacttccctatcataaaaat |
415 |
Q |
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| T |
37284542 |
aatgcatatgtgcttcgttgactcccctatcataaaaat |
37284504 |
T |
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