View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_620 (Length: 223)
Name: NF11453A_low_620
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_620 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 36204289 - 36204097
Alignment:
| Q |
28 |
cacagtccaagggttttgaaggaaaccaaaaagctggacattaaacaaggaaaaacaagtacctcatgactaaaatatgattcaggaagaaaagaaagat |
127 |
Q |
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| T |
36204289 |
cacagtccaagggttttgaaggaaaccacaaagctggacattaaacaaggaaaaacaagtacctcatgactaaaatatgattcaggaggaaaagaaagat |
36204190 |
T |
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| Q |
128 |
tctctccttctttggtagaagtagaaccaagctcattcttggaagcattggggtcacaactccatggtgtgagaaatgaattatctttcttaataa |
223 |
Q |
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| T |
36204189 |
tctctc---ctttggtagaagtagaaccaagctcattcttggaagcattggggtcccaactccaacgtgtgagaaatgaattatctttcttaataa |
36204097 |
T |
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Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 249227 - 249269
Alignment:
| Q |
178 |
gggtcacaactccatggtgtgagaaatgaattatctttcttaa |
220 |
Q |
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| T |
249227 |
gggtcccaactccatggtgtgagaaaagaattatctttcttaa |
249269 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 11068815 - 11068872
Alignment:
| Q |
160 |
tcattcttggaagcattggggtcacaactccatggtgtgagaaatgaattatctttct |
217 |
Q |
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| T |
11068815 |
tcattcttggaagcattagggttccaactccatggagtgagaaaagaatgatctttct |
11068872 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 49348113 - 49348153
Alignment:
| Q |
177 |
ggggtcacaactccatggtgtgagaaatgaattatctttct |
217 |
Q |
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| T |
49348113 |
ggggtcccaactccatggtgtgagaaaagaattatctttct |
49348153 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 42201988 - 42201955
Alignment:
| Q |
184 |
caactccatggtgtgagaaatgaattatctttct |
217 |
Q |
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| T |
42201988 |
caactccatggtgtgagaaaagaattatctttct |
42201955 |
T |
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