View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_622 (Length: 223)

Name: NF11453A_low_622
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_622
NF11453A_low_622
[»] chr4 (4 HSPs)
chr4 (18-214)||(2901798-2901994)
chr4 (18-105)||(2883142-2883229)
chr4 (18-101)||(2872944-2873027)
chr4 (152-217)||(2883013-2883078)
[»] chr2 (3 HSPs)
chr2 (18-99)||(44226436-44226517)
chr2 (18-99)||(44237234-44237315)
chr2 (18-102)||(44214266-44214350)
[»] chr7 (6 HSPs)
chr7 (35-100)||(39333840-39333905)
chr7 (20-92)||(39592655-39592727)
chr7 (39-100)||(39345119-39345180)
chr7 (39-88)||(39551815-39551864)
chr7 (26-91)||(39578189-39578254)
chr7 (39-91)||(39359673-39359725)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 2901798 - 2901994
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901798 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat 2901897  T
Q  118 gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaact 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901898 gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaact 2901994  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 2883229 - 2883142
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacct 105  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  2883229 acatcatgttgactaatatatgcagcagttctctgaggtacaaattcatccatcccatgtccattataagttactctccctgatacct 2883142  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2873027 - 2872944
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2873027 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccattccatatccattataagtcactctaccagat 2872944  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 2883078 - 2883013
Alignment:
Q  152 gtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactgaa 217  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| |||||||  |||||||||||    
T  2883078 gtactcgaggggatttgaactttctcccttaagattataaggtcaagtttttaccactgaactgaa 2883013  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44226436 - 44226517
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 99  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| |||| ||  ||||| ||||| |||||||| |||||||    
T  44226436 acatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag 44226517  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44237234 - 44237315
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 99  Q
    ||||||||||| || ||||| || |||||||||||||||||||| || | ||  ||||| ||||| |||||||| |||||||    
T  44237234 acatcatgttggctgatataagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccag 44237315  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 44214266 - 44214350
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagata 102  Q
    |||||||| || || ||||| ||||||||||||||||||||||| |||| ||  || |||||||| || |||||  |||||||||    
T  44214266 acatcatgctggctgatataagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagata 44214350  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 39333905 - 39333840
Alignment:
Q  35 atatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccaga 100  Q
    |||||||||||||||||| || |||||||||  |||| |||| |||||||||||||| || |||||    
T  39333905 atatgcagcagttctttgggggacaaattcactcatctcatgaccattataagtcacccttccaga 39333840  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39592655 - 39592727
Alignment:
Q  20 atcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcact 92  Q
    ||||| |||||| | ||| |||||||||||||| ||||||||||| | |||| |||| ||||||||| |||||    
T  39592655 atcattttgactgacataagcagcagttctttggggtacaaattctttcatctcatgaccattataactcact 39592727  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 39345180 - 39345119
Alignment:
Q  39 gcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccaga 100  Q
    |||||||||||||| || |||||||||  |||| |||| |||||||||||||| || |||||    
T  39345180 gcagcagttctttgggggacaaattcactcatctcatgaccattataagtcacccttccaga 39345119  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 39551815 - 39551864
Alignment:
Q  39 gcagcagttctttgaggtacaaattcatccatcccatgtccattataagt 88  Q
    ||||||||||||||||| ||||| |||| |||| |||| |||||||||||    
T  39551815 gcagcagttctttgaggcacaaactcattcatctcatgaccattataagt 39551864  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 39578189 - 39578254
Alignment:
Q  26 ttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 91  Q
    |||||| | ||| ||||||||||||||||||||||| |||| |||| |||| || || ||||||||    
T  39578189 ttgactgacataagcagcagttctttgaggtacaaactcattcatctcatgaccgttgtaagtcac 39578254  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 39359725 - 39359673
Alignment:
Q  39 gcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 91  Q
    |||||||||||||| |||||||| |||  |||| |||| ||||||||||||||    
T  39359725 gcagcagttctttggggtacaaactcactcatctcatgaccattataagtcac 39359673  T

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