View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_623 (Length: 223)
Name: NF11453A_low_623
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_623 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 48017023 - 48016829
Alignment:
| Q |
18 |
atttttgctccaaataa-taatagtataagagattcaaattagcctgctgctgattgttccaccaagacctcgtcatagcaaatttaaaaaatggatcgg |
116 |
Q |
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| T |
48017023 |
atttttgctccaaataaataatagtataagagattcaaattagcctgctgctgattgttccaccaagacatcgtcatagcaaatttaaaaaatggatcgg |
48016924 |
T |
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| Q |
117 |
attgatccattacaagcttgttccatggtcaaaattaaaattatatgttagatacatgtattgtatttgctcctgtgtgtgaagatcgtgatatt |
211 |
Q |
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| T |
48016923 |
attgatccagtacaagtttgttccatggtcaaaattaaaattatatgttagatacatgtattgtatatgctcctgtgtgtgaagatcgtgatatt |
48016829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 48012370 - 48012336
Alignment:
| Q |
153 |
aaaattatatgttagatacatgtattgtatttgct |
187 |
Q |
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| T |
48012370 |
aaaattatatgttagatacatgtattgtatatgct |
48012336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 48012731 - 48012697
Alignment:
| Q |
153 |
aaaattatatgttagatacatgtattgtatttgct |
187 |
Q |
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| T |
48012731 |
aaaattatatgttagatacatgtattgtatatgct |
48012697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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