View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_633 (Length: 222)
Name: NF11453A_low_633
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_633 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41704917 - 41705138
Alignment:
| Q |
1 |
acactcaagtgctcgatttgtgtcaacatgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggagaaaccaagagacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704917 |
acactcaagtgctcgatttgtgtcaacttgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggagaaaccaagagacga |
41705016 |
T |
|
| Q |
101 |
ggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggcatgtcttgtgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705017 |
ggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggcatgtcttgtgtga |
41705116 |
T |
|
| Q |
201 |
cacatgaaccgggtaaccaagg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41705117 |
cacatgaaccgggtaaccaagg |
41705138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 1453265 - 1453329
Alignment:
| Q |
158 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaagg |
222 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1453265 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaagg |
1453329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 1464957 - 1465021
Alignment:
| Q |
158 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacacatgaaccgggtaaccaagg |
222 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1464957 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaagg |
1465021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 7564110 - 7564146
Alignment:
| Q |
185 |
ggcatgtcttgtgtgacacatgaaccgggtaaccaag |
221 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
7564110 |
ggcatgtcttgtgtaacacatgaaccaggtaaccaag |
7564146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University