View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_634 (Length: 222)
Name: NF11453A_low_634
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_634 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 4876581 - 4876684
Alignment:
| Q |
17 |
catcattgtttgcttcattaggaatataattaatgaatgatgagtgtcaatgctatacaacgcagcatttataccgctagagagtcaaatttgcttcaat |
116 |
Q |
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| T |
4876581 |
catcattgtttgcttcattaggaatataattaatgaatgatcagtgttaatgctatacaacgcagcatttataccgctagagagtcaaatttgcttcaat |
4876680 |
T |
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| Q |
117 |
ttac |
120 |
Q |
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|||| |
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| T |
4876681 |
ttac |
4876684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 4680243 - 4680191
Alignment:
| Q |
25 |
tttgcttcattaggaatata--attaatgaatgatgagtgtcaatgctataca |
75 |
Q |
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| T |
4680243 |
tttgcttcattaggaatatacaattaatgaatgatgagtgctaatgctataca |
4680191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 10445450 - 10445377
Alignment:
| Q |
17 |
catcattgtttgcttcattaggaatataattaatgaatgatgagtgtcaatgctatacaacgcagcatttatac |
90 |
Q |
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| T |
10445450 |
catcattgtttgtttcattagggatacaattatggactgataagtgttaattctatacaaggaagcatttatac |
10445377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 4926466 - 4926546
Alignment:
| Q |
21 |
attgtttgcttcattaggaatataattaatgaatgatgagtgtcaatgctatacaacgcagcatttataccgctagagagt |
101 |
Q |
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| T |
4926466 |
attgtttgcttcattagggatacaatttatgaatgatgaatactaatactatgcaaggaagcatatatactgctagagagt |
4926546 |
T |
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