View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_636 (Length: 222)
Name: NF11453A_low_636
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_636 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 44211592 - 44211720
Alignment:
| Q |
94 |
taatactactttgcagcatgtggttttagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttttattcttgcttctaccggtcaa |
193 |
Q |
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| T |
44211592 |
taatactactttgcagcatgtggtgctagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttgtattcttgcttctaccggtcaa |
44211691 |
T |
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| Q |
194 |
agttgagacaacaatacggtttgaaggga |
222 |
Q |
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| T |
44211692 |
agatgagacaacaatacggtttgaaggga |
44211720 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 44211499 - 44211535
Alignment:
| Q |
15 |
gacaagggatccatctgtaagacacccattcatttta |
51 |
Q |
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| T |
44211499 |
gacaagggatccacttgtaagacacccattcatttta |
44211535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 44221720 - 44221804
Alignment:
| Q |
104 |
ttgcagcatgtggttttagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttttattcttgcttctaccg |
188 |
Q |
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| T |
44221720 |
ttgcagcttgtgctgtaagtggggctctatatacattaatttgttgtgtgacgggttgtggttgtttatactcatgcatctaccg |
44221804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 6495974 - 6496089
Alignment:
| Q |
103 |
tttgcagcatgtggttttagtggggctctgtatacattgatttgctgtgtgattggatgtggttgtttttattcttgcttctaccggtcaaagttgagac |
202 |
Q |
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| T |
6495974 |
tttgcagcatgtggtgctagtggggctttgtatacattgatttgctgtgtgattgggtgtccttgtttgtattcttgcttctaccggtcaaagatgcgac |
6496073 |
T |
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| Q |
203 |
aacaatacggtttgaa |
218 |
Q |
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| T |
6496074 |
aacaatacggtttgaa |
6496089 |
T |
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