View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_637 (Length: 222)
Name: NF11453A_low_637
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_637 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 13406889 - 13407006
Alignment:
| Q |
53 |
tatgtatatattttaccaggatgagtcggtgcatcttgaaccacttggggtaaatcaaaattagtgccttttattgaaggatatttagatataatctgtt |
152 |
Q |
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| T |
13406889 |
tatgtatatatattacctggatgagttggtgcatcttgaaccacttggggtaaatcaaaattaatgccttttattgaaggatattcagatataatctgtt |
13406988 |
T |
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| Q |
153 |
taaaagcattctctactc |
170 |
Q |
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| T |
13406989 |
tcaaagcattccctactc |
13407006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 19174795 - 19174678
Alignment:
| Q |
53 |
tatgtatatattttaccaggatgagtcggtgcatcttgaaccacttggggtaaatcaaaattagtgccttttattgaaggatatttagatataatctgtt |
152 |
Q |
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| T |
19174795 |
tatgtatatatattacctggatgagttggtgcatcttgaaccacttgaggtaaatcaaaattaatgccttttattgaaggatattcagatataatctgtt |
19174696 |
T |
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| Q |
153 |
taaaagcattctctactc |
170 |
Q |
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| T |
19174695 |
tcaaagcattccctactc |
19174678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 13382567 - 13382656
Alignment:
| Q |
58 |
atatattttaccaggatgagtcggtgcatcttgaaccacttggggtaaatcaaaattagtgccttttattgaaggatatttagatataat |
147 |
Q |
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| T |
13382567 |
atatattttacctggatgagaaggtgcattttgaacaacttgtggcatatcaaaattaattcccttaattgaaggatattgagagataat |
13382656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 13525790 - 13525834
Alignment:
| Q |
119 |
ccttttattgaaggatatttagatataatctgtttaaaagcattc |
163 |
Q |
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| T |
13525790 |
cctttaattgaaggatattcagatataatttgtttcaaagcattc |
13525834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 20576292 - 20576336
Alignment:
| Q |
119 |
ccttttattgaaggatatttagatataatctgtttaaaagcattc |
163 |
Q |
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| T |
20576292 |
cctttaattgaaggatattcagatataatttgtttcaaagcattc |
20576336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 123147 - 123191
Alignment:
| Q |
119 |
ccttttattgaaggatatttagatataatctgtttaaaagcattc |
163 |
Q |
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| T |
123147 |
cctttaattgaaggatattcagatataatttgtttcaaagcattc |
123191 |
T |
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