View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_638 (Length: 221)
Name: NF11453A_low_638
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_638 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 29489207 - 29489031
Alignment:
| Q |
24 |
gccatatgtctcaaaagcatagaaccagctataaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaat |
123 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29489207 |
gccatatgtctcaaatgcatagaaccagctataaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaat |
29489108 |
T |
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| Q |
124 |
gcaccctctagtgtcttaaagatagagatcaattccatcttcccttcctcatactcttctccttttgaaagccacat |
200 |
Q |
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| T |
29489107 |
gccccctctagtgtcttaaagatagagatcaactccatcttcccttcctcatactcttctccttttgaaagccacat |
29489031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 30255831 - 30255951
Alignment:
| Q |
56 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgcaccctctagtgtcttaaagatagagatcaa |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30255831 |
aaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatgccccctctagtgtcttaaagatagagatcaa |
30255930 |
T |
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| Q |
156 |
ttccatcttcccttcctcata |
176 |
Q |
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| T |
30255931 |
ttccatcttcccttcctcata |
30255951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 29491732 - 29491557
Alignment:
| Q |
25 |
ccatatgtctcaaaagcatagaaccagctataaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaatg |
124 |
Q |
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| T |
29491732 |
ccatatgtttcataagcataaaaccagctgtaaaaagggatcaaaccaatgtcaagaaagccaaaagtagcaccaccgtagaaaggcttgtcacccaaag |
29491633 |
T |
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| Q |
125 |
caccctctagtgtcttaaagatagagatcaattccatcttcccttcctcatactcttctccttttgaaagccacat |
200 |
Q |
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||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
29491632 |
tttcctctagtgtcttgaagattgagatcaattctttcttcccttcctcatgctcttccccttttgaaagccacat |
29491557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 29503661 - 29503510
Alignment:
| Q |
24 |
gccatatgtctcaaaagcatagaaccagctataaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccaccataaaaaagtttgtcactcaat |
123 |
Q |
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|||||| || ||||||| || |||||||| ||||||||||||| ||||||||||||||| ||||| || |||||||||||||| ||||||| ||| |
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| T |
29503661 |
gccataagtttcaaaagtgtaaaaccagctgtaaaaagggatcaaaccaatatcaagaaatccaaaagtagcaccaccataaaaagtcttgtcacccaag |
29503562 |
T |
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| Q |
124 |
gcaccctctagtgtcttaaagatagagatcaattccatcttcccttcctcat |
175 |
Q |
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| T |
29503561 |
atttcttctagtgtcttaaagatagagatcaactccttcttcctttcctcat |
29503510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 30255584 - 30255615
Alignment:
| Q |
24 |
gccatatgtctcaaaagcatagaaccagctat |
55 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30255584 |
gccatatgtctcaaaagcatagaaccagctat |
30255615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 8075 - 8145
Alignment:
| Q |
32 |
tctcaaaagcatagaaccagctataaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccacca |
102 |
Q |
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| T |
8075 |
tctcataagtataaaaccaactatagaaagggatcaaagcaatgtcaacaaacccaaatgtgtcaccacca |
8145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 18873565 - 18873635
Alignment:
| Q |
32 |
tctcaaaagcatagaaccagctataaaaagggatcagaccaatatcaagaaacccaaatgtgtcaccacca |
102 |
Q |
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||||| ||| ||| ||||| ||||| |||||||||| | |||| |||| |||||||||||||||||||||| |
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| T |
18873565 |
tctcataagtataaaaccaactatagaaagggatcaaagcaatgtcaacaaacccaaatgtgtcaccacca |
18873635 |
T |
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