View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_64 (Length: 419)
Name: NF11453A_low_64
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_64 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 419
Target Start/End: Complemental strand, 178253 - 177836
Alignment:
| Q |
4 |
aaatgcaattttttcttttatagcgtacacatcaattctgtattatgtgattaacaatgcaacacaatttataatgtttgagagcaagcttttaacattg |
103 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
178253 |
aaatgcaattttttcttttatagcgaacacatcaattctgtattatgtgattaacaatgcaacacaatttataatgtttgagagcaagcttttaacattg |
178154 |
T |
|
| Q |
104 |
--agtcgggctaaggttttatgttgttttaagagagatgcaatttcggagggttagaatttgaagggatgttgatcggatagagagggaaattacacggg |
201 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
178153 |
tgagtcgggctaaggtttcatgttgttttaagagagatgcaatttaggagggtcagaatttgaagggatgttgatcggatagagagggaaattacacggg |
178054 |
T |
|
| Q |
202 |
tagaattccgctaacaaatgaggatgaccttcgcattgatagtgtacttcaaacgtagttttcaaacaaattttttgcaatgtataaacatgaattccct |
301 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
178053 |
tagaattccgctaacaaatgaggatgaccttcacattgatagtgtacttcaaacgtagttttcaaacaaattttctgcaatgtataaacatgaattccct |
177954 |
T |
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| Q |
302 |
caaatataattgcattaattatcatgacgttaaagttctaagcttcgtatataaatgtcattttgtttttgcctgctacattttcgatatatatgacctg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
177953 |
caaatataattgcattaattatcatgacgttaaagttctaagcttcgtatataaatgtcattttgtttttgcctgctacattttcgatatatatgacccg |
177854 |
T |
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| Q |
402 |
tgtggcagcacgggtgga |
419 |
Q |
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| T |
177853 |
tgtggcagcacgggtgga |
177836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 4 - 399
Target Start/End: Complemental strand, 149449 - 149051
Alignment:
| Q |
4 |
aaatgcaattttttcttttatagcgtacacatcaattctgtattatgtgattaacaatgcaacacaatttataatgtttgagagcaagcttttaacattg |
103 |
Q |
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|||||||||||||| |||||||||| ||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
149449 |
aaatgcaattttttattttatagcgaacacatcaattttgtattatgtgatttacaatggaacacaatttataatgtttgagagcaagcttttaacattg |
149350 |
T |
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| Q |
104 |
ag--tcgggctaaggttttatgttgttttaagagagatgcaatttcggagggttagaatttgaagggatgttgatcggatagagagggaaattacacggg |
201 |
Q |
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| | |||||||||||| ||||||| |||||||||||||||||| || || | | |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
149349 |
tgaatagggctaaggtttcatgttgtcttaagagagatgcaatttaggcggatcataatttgaaggcatgttgatcggatagagagggaaattacacggg |
149250 |
T |
|
| Q |
202 |
tagaattccgctaacaaatgaggatgaccttcgcattgatagtgtacttcaaacgtagttttcaaacaaattttttgcaatgtataaacatgaattccct |
301 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||| | |
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| T |
149249 |
tagaattccgctaacaaatgcggatgacctttgcattgatagtgtacttcaaacgcaggtttcaaagaaattttctgcaatgtataaacatgaattcctt |
149150 |
T |
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| Q |
302 |
c-aaatataattgcattaattatcatgacgttaaagttctaagcttcgtatataaatgtcattttgtttttgcctgctacattttcgatatatatgacc |
399 |
Q |
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| |||||||||||||||| ||||| ||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
149149 |
caaaatataattgcattacttatcgtgacgttaaagttttaagtttggtatataaatgtcattttgttttcgcctgctacattttcgatatatatgacc |
149051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 4 - 398
Target Start/End: Original strand, 33690060 - 33690456
Alignment:
| Q |
4 |
aaatgcaattttttcttttatagcgtacacatcaattctgtattatgtgattaacaatgcaacacaatttataatgtttgagagcaagcttttaacatt- |
102 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33690060 |
aaatgcaattttttcttttatagcgaacacatcaattatgtattatgtgatttacaatgcaacacaatttataatgtttgagagcaagcttttaacatta |
33690159 |
T |
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| Q |
103 |
-gagtcgggctaaggttttatgttgttttaagagagatgcaatttcggagggttagaatttgaagggatgttgatcggatagagagggaaattacacggg |
201 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
33690160 |
ggagtcgggctaaggtttcatgttgttttaagagagatgcaattttggcgggtcagaatttgaaggtatgttgatcggatagagatggaaattacacggg |
33690259 |
T |
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| Q |
202 |
tagaattccgctaacaaatgaggatgaccttcgcattgatagtgtacttcaaacgtagttttcaaacaaattttttgcaatgtataaacatgaattccct |
301 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| | |
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| T |
33690260 |
tagaattccgctaacaaatgaggatgatctttgcattgatagtgtacttcaaacgtagttttcaaagaatatttctgcaatgtataaacatgaattcctt |
33690359 |
T |
|
| Q |
302 |
caaatataattgcattaattatcatgacgttaaagttctaagcttcgtatataaatgtcattttgtttttgcctgctacattttcgatatatatgac |
398 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
33690360 |
caaatataattgcattaattatcataacgttaaagttttaagcttggtatataaatgtcattttgtttttacctactacattttcgatatatatgac |
33690456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 22290027 - 22289966
Alignment:
| Q |
356 |
atgtcattttgtttttgcctgctacattttcgatatatatgacctgtgtggcagcacgggtg |
417 |
Q |
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|||||||||||||||||||| |||||||||| || |||||||| ||| ||||||||||||| |
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| T |
22290027 |
atgtcattttgtttttgccttctacattttcaatgtatatgactcgtgcggcagcacgggtg |
22289966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 8942784 - 8942667
Alignment:
| Q |
30 |
acacatcaattctgtattatgtgattaacaatgcaacacaatttataatgtttgagagcaagcttttaacatt--gagtcgggctaaggttttatgttgt |
127 |
Q |
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||||||||||| |||| ||||||||| ||||||||||||||||||| | || ||||||||||||||||||||| ||| | ||||||| ||| ||||||| |
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| T |
8942784 |
acacatcaatt-tgtagtatgtgatttacaatgcaacacaatttatcaagtgtgagagcaagcttttaacattgggaggctggctaagttttcatgttgt |
8942686 |
T |
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| Q |
128 |
tttaagagagatgcaattt |
146 |
Q |
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| T |
8942685 |
tttaagagagatgcaattt |
8942667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 15432409 - 15432349
Alignment:
| Q |
356 |
atgtcattttgtttttgcctgctacattttcgatatatatgacctgtgtggcagcacgggt |
416 |
Q |
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|||||| ||||||||||||| ||||||||||||| ||||||||| ||| ||| |||||||| |
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| T |
15432409 |
atgtcactttgtttttgccttctacattttcgatgtatatgacccgtgcggccgcacgggt |
15432349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 21670145 - 21670201
Alignment:
| Q |
363 |
tttgtttttgcctgctacattttcgatatatatgacctgtgtggcagcacgggtgga |
419 |
Q |
| |
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|||||||||| || |||||| | | || ||||||||||||| ||||||||||||||| |
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| T |
21670145 |
tttgtttttgtctactacatctacaatgtatatgacctgtgcggcagcacgggtgga |
21670201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 27903482 - 27903426
Alignment:
| Q |
363 |
tttgtttttgcctgctacattttcgatatatatgacctgtgtggcagcacgggtgga |
419 |
Q |
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|||||||||| || |||||| | | |||||||||||| ||| ||||||||||||||| |
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| T |
27903482 |
tttgtttttgtctactacatctacaatatatatgacccgtgcggcagcacgggtgga |
27903426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 1396153 - 1396209
Alignment:
| Q |
363 |
tttgtttttgcctgctacattttcgatatatatgacctgtgtggcagcacgggtgga |
419 |
Q |
| |
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|||||||||| ||||||||| | | || ||||||||| ||| ||||||||||||||| |
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| T |
1396153 |
tttgtttttgtctgctacatctgcaatgtatatgacccgtgcggcagcacgggtgga |
1396209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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