View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_642 (Length: 220)
Name: NF11453A_low_642
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_642 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 19506319 - 19506523
Alignment:
| Q |
16 |
ataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgca |
115 |
Q |
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| T |
19506319 |
ataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgca |
19506418 |
T |
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| Q |
116 |
atgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcatgtgggttcatctgttgggaatccagtgagatatgagagtctca |
215 |
Q |
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| T |
19506419 |
atgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcacgtaggttcatctgttgggaatccagtgagatatgagagtctca |
19506518 |
T |
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| Q |
216 |
gagac |
220 |
Q |
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| T |
19506519 |
gagac |
19506523 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 36194326 - 36194208
Alignment:
| Q |
83 |
aagcagatccctgctgatatggtggtgaatgcaatgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcatgtgggttcat |
182 |
Q |
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| T |
36194326 |
aagcagataccagctgacatggtggtcaatgcaatgttagtggctatggtggctcatgcaaatcaacctagagatg---gggtatatcatgtgggttcct |
36194230 |
T |
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| Q |
183 |
ctgttgggaatccagtgagata |
204 |
Q |
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| T |
36194229 |
ctgttagaaacccattgagata |
36194208 |
T |
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