View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_644 (Length: 220)
Name: NF11453A_low_644
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_644 |
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Alignment Details
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 16146565 - 16146494
Alignment:
| Q |
145 |
tcaagacttttggagataagcttttgtttgtaggtggacaaaggggtccagaaggtgaagaagctgtagtag |
216 |
Q |
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| T |
16146565 |
tcaagatttgtggagataagctgttgtttgtaggtggacaaagtggtccggaaggggaagaagctgtagtag |
16146494 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 16146646 - 16146580
Alignment:
| Q |
3 |
cacctcttcttgctgtacttaacgattggttgtacacaattgaacgtttaaatagcatgatcaagaa |
69 |
Q |
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| T |
16146646 |
caccacttgttgctgtatttaatgattagttgtaagcaattgaacgtttaactagcatgatcaagaa |
16146580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 40119334 - 40119393
Alignment:
| Q |
145 |
tcaagacttttggagataagcttttgtttgtaggtggacaaaggggtccagaaggtgaag |
204 |
Q |
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| T |
40119334 |
tcaaggcttgtggagataaacttttggtcgtaggtggacaaaggggtccagaaggtgaag |
40119393 |
T |
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