View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_647 (Length: 219)
Name: NF11453A_low_647
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_647 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 35491210 - 35491030
Alignment:
| Q |
22 |
aaggcgttac-atcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttgttttcgaaatcttctaaggtttctaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35491210 |
aaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatcttctaaggtttctaa |
35491111 |
T |
|
| Q |
121 |
tatttctccttcatcacttagctttacatctgatgaatacaaagcaacccaaaactggccattcgaatttctccttatatt |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
35491110 |
tatttctccttcatcactcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatatt |
35491030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 35497428 - 35497344
Alignment:
| Q |
22 |
aaggcgttac-atcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttgttttcgaaatc |
105 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35497428 |
aaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttcctttcgaaatc |
35497344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 35504145 - 35504034
Alignment:
| Q |
35 |
gatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttgttttcgaaatcttctaaggtttctaatatttctccttcat |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||||| ||| ||||| |||||| ||| ||||||| | | |||||||||||| ||||||| |
|
|
| T |
35504145 |
gatgccatccaaagttttccatctttctcttcaatttcactgatgaacttcaaggtcttcccttcacaatcttccaggacttctaatatttccccttcat |
35504046 |
T |
|
| Q |
135 |
cacttagcttta |
146 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
35504045 |
cactcagcttta |
35504034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 35512771 - 35512666
Alignment:
| Q |
41 |
atccaaagttttccatctttctcttccacttcactaatgttcttcatggtcttgttttcgaaatcttctaaggtttctaatatttctccttcatcactta |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||| |||||| | |||||| |||||| ||||||||||| | |
|
|
| T |
35512771 |
atccaaagttttccatctttctcttccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttccccttcatcactca |
35512672 |
T |
|
| Q |
141 |
gcttta |
146 |
Q |
| |
|
|||||| |
|
|
| T |
35512671 |
gcttta |
35512666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 40161624 - 40161537
Alignment:
| Q |
114 |
tttctaatatttctccttcatcacttagctttacatctgatgaatacaaagcaacccaaaactggccattcgaatttctccttatatt |
201 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||| | ||| || |||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
40161624 |
tttctaatatttccccttcatcactcaactttatagctgcattatgcaaagcaacccaaaactgcccatctgaatttctccttatatt |
40161537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University