View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_651 (Length: 219)
Name: NF11453A_low_651
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_651 |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 32724922 - 32724722
Alignment:
| Q |
19 |
gtctagacataagaaccatacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtt |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |
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| T |
32724922 |
gtcttgacataagaaccatacttttttctctgaaccatgaaatgctgagaaagaatcttttaacatccattaccttcaacacctttctaaaaagcctgtt |
32724823 |
T |
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| Q |
119 |
aacccaaataacttgtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcat |
218 |
Q |
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| T |
32724822 |
aacccaaataacttatgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccataatctctctatcattcttgtcttctcat |
32724723 |
T |
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| Q |
219 |
g |
219 |
Q |
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| T |
32724722 |
g |
32724722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 32723453 - 32723267
Alignment:
| Q |
35 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtta--acccaaataactt |
132 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||| | |||| || |||||||||| |
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| T |
32723453 |
catactttttcatctgaaccatgaaatgctgataaagaatcttgtaacatccactaccttcaacacctttctcaaaaacatgttataactcaaataactt |
32723354 |
T |
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| Q |
133 |
gtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatg |
219 |
Q |
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| T |
32723353 |
gtgtcaccattaatataaaacaaaaattactgtttctctactaaacctgtaaacccatcatctctctatctttcctgtcttctcatg |
32723267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 4002081 - 4001942
Alignment:
| Q |
19 |
gtctagacataagaaccatacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgtt |
118 |
Q |
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|||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |
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| T |
4002081 |
gtctaggcataagaaccatacttttttctctaaaccatgaaattatgagaaagaatcttttaacatccactaccttcaacatctttctcaaaaacatgtt |
4001982 |
T |
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| Q |
119 |
aacccaaataacttgtgtcaccattgatacaaaacaaaaa |
158 |
Q |
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| T |
4001981 |
aacccaaataacttgcgttaccattgataaaaaaaaaaaa |
4001942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 15720179 - 15719992
Alignment:
| Q |
35 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgt--taacccaaataactt |
132 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||| | || ||||||||||||||| |
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| T |
15720179 |
catactttttcatctgaaccatgaaatactgagaaagaatcttgtaacatccactaccttcaacacctttctcaaaaacttgttataacccaaataactt |
15720080 |
T |
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| Q |
133 |
gtgtcaccattgatacaaaac-aaaaattactctttctctaataaacatgtaaacccatcatctctgtatcattcttgtcttctcatg |
219 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||| |||| |||||||||||||||| |
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| T |
15720079 |
gtgtcaccattaatacaaaacaaaaaattactctttctctactaaacctgtacacccatcatctctctatctttcttgtcttctcatg |
15719992 |
T |
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