View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_652 (Length: 219)
Name: NF11453A_low_652
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_652 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 30316046 - 30315827
Alignment:
| Q |
1 |
agtagcatagatgagtattatgagnnnnnnn-tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactc |
99 |
Q |
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| T |
30316046 |
agtagcatagatgagtattatgagaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactc |
30315947 |
T |
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| Q |
100 |
tagttatagttacaagataatgacgttttattctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattgaaaagc |
199 |
Q |
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| T |
30315946 |
tagttacaattacaagataatgccgttttattctttgctcactatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagc |
30315847 |
T |
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| Q |
200 |
tcccaaaattgaagaaatag |
219 |
Q |
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|||||||||||||||||||| |
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| T |
30315846 |
tcccaaaattgaagaaatag |
30315827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 30305147 - 30304961
Alignment:
| Q |
32 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
131 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30305147 |
tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttatt |
30305049 |
T |
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| Q |
132 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattgaaaagctcccaaaattgaagaaatag |
219 |
Q |
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| T |
30305048 |
catcgctcattattagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaatag |
30304961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 30287462 - 30287293
Alignment:
| Q |
43 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
142 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||||||||||||| |||| | |
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| T |
30287462 |
gaggaggcacaaaacttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcatt |
30287370 |
T |
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| Q |
143 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattgaaaagctcccaaaattgaagaaatag |
219 |
Q |
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| T |
30287369 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaatag |
30287293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 30300349 - 30300174
Alignment:
| Q |
32 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
131 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||| |
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| T |
30300349 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttatt |
30300257 |
T |
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| Q |
132 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattgaaaagctcccaaaattgaaga |
214 |
Q |
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| T |
30300256 |
ctctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaaga |
30300174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 30292485 - 30292380
Alignment:
| Q |
43 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
142 |
Q |
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| T |
30292485 |
gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcact |
30292387 |
T |
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| Q |
143 |
atgagct |
149 |
Q |
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| T |
30292386 |
atgagct |
30292380 |
T |
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