View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_653 (Length: 219)
Name: NF11453A_low_653
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_653 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 29408425 - 29408622
Alignment:
| Q |
4 |
atggacatccggctatagagtgaggactggaacaaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaat |
103 |
Q |
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| T |
29408425 |
atggacattaggctatagagtgaggactggaataaactttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaat |
29408524 |
T |
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| Q |
104 |
ttcctacaaaagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcatcaatgatgtgtggcttaaatatgattggaatgagcaatatt |
201 |
Q |
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| T |
29408525 |
ttcctacaaaagaaaaaagttagctatggtgatttgcgctaagatggtcaacttcattaatgatgtgtggcttaaatatgattgcaatgagcaatatt |
29408622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 29456175 - 29456102
Alignment:
| Q |
39 |
actttgtagattataaaaatggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaa |
112 |
Q |
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| T |
29456175 |
actttgtagattacaataatggcatcaaaagatatccaaaaatgtctgcaatctggtttaagaattttctacaa |
29456102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 29425731 - 29425821
Alignment:
| Q |
57 |
atggtctcaaaagatatccaaaaatgtcagccatatggtttagaaatttcctacaaaagaaaaaagttagctatggtgatttgcgctaaga |
147 |
Q |
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| T |
29425731 |
atggcctcaaaagatatccaaaaatgtcagctgtatggttcaagaattttctacaacataaaatagttgcatatggtgattcacgctaaga |
29425821 |
T |
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