View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_654 (Length: 219)
Name: NF11453A_low_654
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_654 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 41222977 - 41222765
Alignment:
| Q |
1 |
tgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgactatgttgtttta |
100 |
Q |
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| T |
41222977 |
tgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcaggattcaacatggagaagacatgacatattggtgactatgttgtggta |
41222878 |
T |
|
| Q |
101 |
ctatgtagcttgtgttgtagcatatacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaacaatactttat |
200 |
Q |
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| T |
41222877 |
ctatgtagcttatgttgtagcatatatgtagagatcattctatttcactggttacagtagtatgtgttgtgtcaaactggttctaggaacaatactttat |
41222778 |
T |
|
| Q |
201 |
tattgggttgcac |
213 |
Q |
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||||||||||||| |
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| T |
41222777 |
tattgggttgcac |
41222765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 16234043 - 16234263
Alignment:
| Q |
1 |
tgccttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgactat----gttgt |
96 |
Q |
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| T |
16234043 |
tgccttcagaagcaccgatgtcacttgttattggatttcatccaactttgcaggattcaacatggagaagacatgacatattggtgactatatatgttgt |
16234142 |
T |
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| Q |
97 |
tttactatgtagcttgtgttgtagcatatacg----tagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaacaa |
192 |
Q |
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| T |
16234143 |
tttactatggagcttatgttgtagcatatacgtacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaacaa |
16234242 |
T |
|
| Q |
193 |
tactttattattgggttgcac |
213 |
Q |
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||||||||||||||||||||| |
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| T |
16234243 |
tactttattattgggttgcac |
16234263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 41217174 - 41217096
Alignment:
| Q |
12 |
gcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgacta |
90 |
Q |
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| T |
41217174 |
gcactgatatcaattgttacttgatttcatccaaccttgcaggattcacaatgaagaagacatgacatattggtgacta |
41217096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 41217055 - 41217009
Alignment:
| Q |
167 |
ttgtgtcacactggttctaggaacaatactttattattgggttgcac |
213 |
Q |
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| T |
41217055 |
ttgtgtcacactggttctaggaataatgttttatttttgggttgcac |
41217009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 1598695 - 1598903
Alignment:
| Q |
5 |
ttcagaagcaccgatgtcacttgttatttgatttcatccaactttgcatgattcaacatggagaagacatgacatattggtgactatgttgttttactat |
104 |
Q |
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||||||| ||| ||| |||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| | ||||||| |
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| T |
1598695 |
ttcagaaacactgatatcacttgttacttgatttcatccatctttgcaggatttaacatggagaagacatgacatattgttgactatgtcctgttactat |
1598794 |
T |
|
| Q |
105 |
gtagcttgtgttgtagcatatacgtagagatcgttctatttcactggttaaaggagtatttgttgtgtcacactggttctaggaacaatactttattatt |
204 |
Q |
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||| ||| || |||||||||| ||| || ||| | ||||||||| |||| || ||||| | ||||||||| || ||||||| |||||||| || || || |
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| T |
1598795 |
gtaacttaggtcgtagcatatatgtaaagttcggtttatttcactagttatagtagtatattttgtgtcacgcttgttctagaaacaatacattgttttt |
1598894 |
T |
|
| Q |
205 |
gggttgcac |
213 |
Q |
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|||||||| |
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| T |
1598895 |
tggttgcac |
1598903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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