View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_657 (Length: 218)
Name: NF11453A_low_657
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_657 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24639498 - 24639287
Alignment:
| Q |
1 |
acaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcccctaaaagatacag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24639498 |
acaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaaagatacag |
24639399 |
T |
|
| Q |
101 |
caacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639398 |
caacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattg |
24639299 |
T |
|
| Q |
201 |
tttcctacatat |
212 |
Q |
| |
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|||||||||||| |
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| T |
24639298 |
tttcctacatat |
24639287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52491268 - 52491479
Alignment:
| Q |
1 |
acaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcccctaaaagatacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52491268 |
acaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaaagatacag |
52491367 |
T |
|
| Q |
101 |
caacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491368 |
caacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattg |
52491467 |
T |
|
| Q |
201 |
tttcctacatat |
212 |
Q |
| |
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|||||||||||| |
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| T |
52491468 |
tttcctacatat |
52491479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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