View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_662 (Length: 216)
Name: NF11453A_low_662
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_662 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 12892319 - 12892500
Alignment:
| Q |
16 |
aaaatatatgttacctcagcgcatggcacacgaattaaaaaatgcagttaatttcgtatgagaatgagaaactataacttagtttacaaagttacccttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12892319 |
aaaatatatgttacctcagcgcatggcacacgaattaaaaaatgcagttaatttcgtatgagaatgagaaattataacttagtttacaaagttacccttc |
12892418 |
T |
|
| Q |
116 |
attaatgctatggg-aagacaagtccaattatgtaacttcacatagcaccttaagcatttaggaaagtctgtagtaggcatgat |
198 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12892419 |
attaatgctatgggaaagataagtccaattatgtaacttcac--agcatcttcagcatttaggaaagtctgtagtaggcatgat |
12892500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 6620 - 6803
Alignment:
| Q |
16 |
aaaatatatgttacctcagcgcatggcacacgaattaaaaaatgcagttaatttcgtatgagaatgagaaactataacttagtttacaaagttacccttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6620 |
aaaatatatgttacctcagcgcatggcacacaaattaaaaaatgcagttaatttcgtatgagaatgagaaattataacttagtttacaaagttacccttc |
6719 |
T |
|
| Q |
116 |
attaatgctatggg-aagacaagtccaattatgtaacttcacatagcaccttaagcatttaggaaagtctgtagtaggcatgat |
198 |
Q |
| |
|
||||||| |||||| |||| || ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
6720 |
attaatggtatgggaaagataaaaccaattacgtaacttcacatagcatcttaagcatttagggaagtctgtagtaggcatgat |
6803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University