View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_663 (Length: 215)
Name: NF11453A_low_663
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_663 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 32096265 - 32096466
Alignment:
| Q |
14 |
atttttatttacatttagtctctaattcgataattttagtgagaattttcatctatgttcagtagctgaaatcatcaatcagtagattaaacatgaaatg |
113 |
Q |
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| T |
32096265 |
atttttatttacatttagtctctaattcgataattttagtgagaattttcatctatgtttagtagctgaaatcatcaatcagtagattaaacatgaaatg |
32096364 |
T |
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| Q |
114 |
atttttatgtaaaacttgactcccaatccaaacagctgttcatattgccccaggaatcagcaaacttcttaccaacattttaatattactaatgtctgta |
213 |
Q |
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| T |
32096365 |
attttaatgtaaaacttgactcccaatccaaacagctgttcatattgccccaggaatcagcaaacttcttaccaacattttaatattactaatgtatgta |
32096464 |
T |
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| Q |
214 |
gg |
215 |
Q |
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|| |
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| T |
32096465 |
gg |
32096466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 32092622 - 32092731
Alignment:
| Q |
14 |
atttttatttacatttagtctctaattcgataattttagtgagaattttcatctatgttcagtagctgaaatcatcaatcagtagattaaacatgaaatg |
113 |
Q |
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|||||||||||||| |||||||| ||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
32092622 |
atttttatttacatatagtctctcatttggtaattttagtgagaactttcatctatgtttagtagctgaaatcatcaatcagtagattaaacataaaatg |
32092721 |
T |
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| Q |
114 |
atttttatgt |
123 |
Q |
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| T |
32092722 |
atttttatgt |
32092731 |
T |
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