View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_667 (Length: 214)

Name: NF11453A_low_667
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_667
NF11453A_low_667
[»] chr6 (2 HSPs)
chr6 (27-105)||(25181901-25181979)
chr6 (104-197)||(26287307-26287399)
[»] chr2 (1 HSPs)
chr2 (112-171)||(18818271-18818331)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 25181901 - 25181979
Alignment:
Q  27 ctccccagccaccacaaacagcttcaaatcccgtccacgttctcctctttcatcttccatttccacaatgccttcctcc 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25181901 ctccccagccaccacaaacagcttcaaatcccgtccacgttttcctctttcatcttccatttccacaatgccttcctcc 25181979  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 26287399 - 26287307
Alignment:
Q  104 ccaactctcaacccaacactaacaaccaccacctcactgttaacgtaaaacaacaccaacaaccacctagaaccacccacatcaccgtcaacac 197  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26287399 ccaactcccaacccaacactaacaaccaccacctcaccgttaacgcaaaacaacaccaacaa-cacctagaaccacccacatcaccgtcaacac 26287307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 18818271 - 18818331
Alignment:
Q  112 caacccaacactaacaaccacc-acctcactgttaacgtaaaacaacaccaacaaccacct 171  Q
    ||||||||||| ||||| |||| || ||| | |||||| ||||||||||||||||||||||    
T  18818271 caacccaacacgaacaatcacccacatcagtattaacgcaaaacaacaccaacaaccacct 18818331  T

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