View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_668 (Length: 213)
Name: NF11453A_low_668
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_668 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 38930669 - 38930787
Alignment:
| Q |
95 |
tgtaattaattctttgttctttatgtacacacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttgttnnnnnnnntaatat |
194 |
Q |
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| T |
38930669 |
tgtaattaatactttgttctttatgtacacacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttattaaaaaaaaaaatat |
38930768 |
T |
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| Q |
195 |
aggcttagtatacaacctt |
213 |
Q |
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||||||||||||||||||| |
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| T |
38930769 |
aggcttagtatacaacctt |
38930787 |
T |
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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 38930203 - 38930295
Alignment:
| Q |
1 |
ttttcaccaaaatcttaaagcatcgatagagtatacaaatcctctcaagtatgtggaactaaacatttttatcaaaagcggaactctttttta |
93 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
38930203 |
ttttcaccaaaatcttaaagtatcgatagagtatacgaatcctctcaagcatgtggaactaaacatttttatcaaaagcagaactcttattta |
38930295 |
T |
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