View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_670 (Length: 212)
Name: NF11453A_low_670
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_670 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 17167520 - 17167634
Alignment:
| Q |
16 |
aacaaaatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtga |
115 |
Q |
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| T |
17167520 |
aacaatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtga |
17167619 |
T |
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| Q |
116 |
cttaaacatatcaaa |
130 |
Q |
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| T |
17167620 |
cttaaacatatcaaa |
17167634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 17173097 - 17173211
Alignment:
| Q |
16 |
aacaaaatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtga |
115 |
Q |
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| T |
17173097 |
aacaatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtga |
17173196 |
T |
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| Q |
116 |
cttaaacatatcaaa |
130 |
Q |
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| T |
17173197 |
cttaaacatatcaaa |
17173211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 17251655 - 17251590
Alignment:
| Q |
16 |
aacaaaatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgttttta |
81 |
Q |
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| T |
17251655 |
aacaatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgttttta |
17251590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 17251245 - 17251188
Alignment:
| Q |
73 |
ttgtttttataaggaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
130 |
Q |
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| T |
17251245 |
ttgtttttataagcaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
17251188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 17250506 - 17250438
Alignment:
| Q |
125 |
atcaaatgtttttatattttgagggacaattgacttatttaacctttttattaataatatgtagagcat |
193 |
Q |
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||||||||||| ||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17250506 |
atcaaatgtttgtatatttggaaggaccatttacttatttaacctttttattaataatatgtagagcat |
17250438 |
T |
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