View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_673 (Length: 211)
Name: NF11453A_low_673
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_673 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4111557 - 4111760
Alignment:
| Q |
1 |
atctgatatatatgagatattgtttgtattccgcggcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaaccttt |
100 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4111557 |
atctgatatatataagatattgtttgtattccgctgcgagattttataaatccgaattatgcatgtttttgaaaatgatgacgtaacatcttgaaccttt |
4111656 |
T |
|
| Q |
101 |
tgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtgcaaagtgaaggcaagcagcaagatgactttcatcctctcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
4111657 |
tgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaccgtgcaaggtgaaggcaaggagcaagatgactttcatcctctcttt |
4111756 |
T |
|
| Q |
201 |
gttt |
204 |
Q |
| |
|
|||| |
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|
| T |
4111757 |
gttt |
4111760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 27556244 - 27556087
Alignment:
| Q |
1 |
atctgatatatatgagatattgtttgtattccgcggcgagattttat-aaatctgaatgatgcatgttttt--gaaaatgatgacgtaacatcttgaac- |
96 |
Q |
| |
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|||||| |||| |||||| |||||| |||||||| ||||| |||||| ||| | |||| |||||||||||| |||||| ||||||| ||||||||||| |
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| T |
27556244 |
atctgagatatttgagatgttgtttttattccgctgcgag-ttttatgaaaaccgaattatgcatgtttttgagaaaattatgacgtgacatcttgaact |
27556146 |
T |
|
| Q |
97 |
cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca |
155 |
Q |
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||||||| ||| |||| ||||||| | ||||| || |||||| ||||| ||||||| |
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|
| T |
27556145 |
cttttgattaaatgatttagttgcattaattattgcttctggggtacaagggtgttaca |
27556087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 28580033 - 28580128
Alignment:
| Q |
59 |
atgcatgttttt-gaaaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta |
153 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||| ||| || ||| || |||||||||||| |||||| || |||||||||||| ||||| |
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| T |
28580033 |
atgcatgttttaagaaaatgatgacgtatcatcttgaactcttt-aattaaatgatttatttgcattaaatattacttttggggttcaagggtgtta |
28580128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 5699611 - 5699760
Alignment:
| Q |
8 |
atatatgagatattgtttgtattccgcggcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaaccttttgaaa |
105 |
Q |
| |
|
|||| |||||| |||||| |||||||| | || |||||| ||||| ||| ||||||||||| |||||||||| ||| |||||||||| || ||||| |
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| T |
5699611 |
atatttgagatgttgtttttattccgctacaagtttttatgaaatccaaattatgcatgttttgagaaaatgatggagtagcatcttgaacattatgaaa |
5699710 |
T |
|
| Q |
106 |
taattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca |
155 |
Q |
| |
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||| |||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
5699711 |
taactgtttatttgcattaaatattgtttgtagggttcaaggatgttaca |
5699760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 6075575 - 6075476
Alignment:
| Q |
59 |
atgcatgtttttga--aaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgttaca |
155 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||| || ||| || |||||||||||| |||||| |||||||||||||| | ||||||| |
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| T |
6075575 |
atgcatgtttttgagaaaatgataacgtaacatcttgaattcttttaattaaatgatttatttgcattaaatattttttgtggggttcaacggtgttaca |
6075476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 11898246 - 11898102
Alignment:
| Q |
13 |
tgagatattgtttgtattccgcggcgagattttat-aaatctgaatgatgcatgtttttga-aaatgatgacgtaacatcttgaa-ccttttgaaataat |
109 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||| ||| |||||| ||||||||||||| |||| ||||||||||||||| |||||| ||||||| |
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| T |
11898246 |
tgagatattgtttttattccgctgcgag-ttttatgaaaactgaattctgcatgtttttgagttttgataacgtaacatcttgaatcctttttaaataat |
11898148 |
T |
|
| Q |
110 |
tgtttatttgcatttaatattgtttgtggggttcaaggatgttaca |
155 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||| ||||||| |
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| T |
11898147 |
tgtttattagcattaaatatttcttgtggggttcaagggtgttaca |
11898102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 5712911 - 5713014
Alignment:
| Q |
52 |
ctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac-cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaagga |
148 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||| |||||||||||| |||||||| |||||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
5712911 |
ctgaattatgcatgttttgagaaaatgaagacataacatcttgaattcttttgaa-taattgatttatttgcattaaatattgcttgtggggttcaaggg |
5713009 |
T |
|
| Q |
149 |
tgtta |
153 |
Q |
| |
|
||||| |
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|
| T |
5713010 |
tgtta |
5713014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 15663257 - 15663366
Alignment:
| Q |
52 |
ctgaatgatgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaagga |
148 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| ||| ||||||| || |||||||||||| |||||||||||| |||||||||| |
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|
| T |
15663257 |
ctgaattatgcatgtttttgagaaaatgatgacgtaacatcttaaactcttttgattaaacgatttatttgcattaaatattgtttgtagggttcaaggg |
15663356 |
T |
|
| Q |
149 |
tgttacagtg |
158 |
Q |
| |
|
||||| |||| |
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|
| T |
15663357 |
tgttatagtg |
15663366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 15551149 - 15551290
Alignment:
| Q |
15 |
agatattgtttgtattccgcggcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac-cttttgaaataattg |
111 |
Q |
| |
|
||||||||||| |||||||| |||| |||||| ||| | | || ||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
15551149 |
agatattgtttttattccgctacgag-ttttatgaaaacaggattatgcatgttttgagaaaatgatgacgtaacatcttgaactcttttgattaaatga |
15551247 |
T |
|
| Q |
112 |
tttatttgcatttaatattgtttgt-ggggttcaaggatgtta |
153 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||| ||||| |
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|
| T |
15551248 |
tttatttgcattaaatattgcttgtgggggttcaagggtgtta |
15551290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 18448622 - 18448525
Alignment:
| Q |
59 |
atgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgtta |
153 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| ||||||| ||| |||||||||||| |||| || ||||||||||||||| ||||| |
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|
| T |
18448622 |
atgcatgtttttgagaaaatgatgacgtagcatcttgaactcttttgattaaatgatttatttgcattaaatactgcttgtggggttcaagggtgtta |
18448525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 11476263 - 11476179
Alignment:
| Q |
72 |
aaaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca |
155 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| || |||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
11476263 |
aaaatgatgacgtgacatcttgaactcttttgattagatgatttatttgcattaaatattgtttgtggagttcaagggtgttaca |
11476179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 20880945 - 20880795
Alignment:
| Q |
8 |
atatatgagatattgtttgtattccgcggcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaac-cttttgaaat |
106 |
Q |
| |
|
|||| |||||| |||||| ||||||| || |||||| ||| | |||| |||||||||||||| || |||||||||| ||||||| ||||||| |
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|
| T |
20880945 |
atatttgagatgttgtttttattccgatgcaagatttatgaaaaccgaattatgcatgtttttgagaaa-atgacgtaacgtcttgaattcttttgatta |
20880847 |
T |
|
| Q |
107 |
aattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtg |
158 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
20880846 |
aatgatttatttgcattacatatttcttgtggggttcaagggtgttacagtg |
20880795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 19079994 - 19080069
Alignment:
| Q |
71 |
gaaaatgatgacgtaacatcttgaac-cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaa |
145 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| | |||||| | ||||||||| |||||| |||||||||||||| |
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|
| T |
19079994 |
gaaaatgatgatgtaacatcttgaactcttttg-attaattgatgaatttgcattaaatattatttgtggggttcaa |
19080069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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