View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_685 (Length: 207)
Name: NF11453A_low_685
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_685 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 19896473 - 19896344
Alignment:
| Q |
20 |
acttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcattatgcttctttactattaca |
119 |
Q |
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| T |
19896473 |
acttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctttttcagtctttatttccaaaccactttgatcattatgcttctttactattaca |
19896374 |
T |
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| Q |
120 |
tctacaagacgttttacaatgtcttcgttg |
149 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19896373 |
tctacaagacgttttacaatgtcttcgttg |
19896344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 20123345 - 20123489
Alignment:
| Q |
20 |
acttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcattatgcttctttactattaca |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |
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| T |
20123345 |
acttttgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcatcatg---ctttactattgca |
20123441 |
T |
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| Q |
120 |
tctacaagacgttttacaatgtcttcgttgtcaatgcttattgccaca |
167 |
Q |
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| T |
20123442 |
tctacaagacgttttacactgtcttcgttggcattgcttactgccaca |
20123489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 20089489 - 20089615
Alignment:
| Q |
20 |
acttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcattatgcttctttactattaca |
119 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |
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| T |
20089489 |
acttttgaatcctctatatgctgcaagatgaagaggagtatcacctctttcagtctttatttcaaaaccactttgatcatcatg---ctttactattgca |
20089585 |
T |
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| Q |
120 |
tctacaagacgttttacaatgtcttcgttg |
149 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20089586 |
tctacaagacgttttacaatgtcttcgttg |
20089615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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