View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_698 (Length: 204)

Name: NF11453A_low_698
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_698
NF11453A_low_698
[»] chr7 (1 HSPs)
chr7 (21-182)||(22077166-22077327)
[»] chr2 (1 HSPs)
chr2 (21-182)||(40446944-40447105)
[»] chr1 (3 HSPs)
chr1 (21-182)||(337571-337732)
chr1 (136-182)||(43408313-43408359)
chr1 (144-182)||(37667704-37667742)
[»] chr4 (2 HSPs)
chr4 (21-182)||(68810-68970)
chr4 (136-182)||(40458553-40458599)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 22077166 - 22077327
Alignment:
Q  21 ataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcttattctttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  22077166 ataattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgttccctctcacaatattctcttattacttcctattctttg 22077265  T
Q  121 actacacaaatcattttgtatacaaatattttccaagctcatcgatcaattcctagagttta 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22077266 actacacaaatcattttgtatacaaatattttccaagctcatcaatcaattcctagagttta 22077327  T

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Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 40446944 - 40447105
Alignment:
Q  21 ataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcttattctttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  40446944 ataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattgttccctctcacagtattctcttattacttcctattctttg 40447043  T
Q  121 actacacaaatcattttgtatacaaatattttccaagctcatcgatcaattcctagagttta 182  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  40447044 actacacaaatcattttgtatacaaattttttccaagctcatcaatcaactcctagagttta 40447105  T

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Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 337571 - 337732
Alignment:
Q  21 ataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcttattctttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||    
T  337571 ataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattattccctctcacagtattctcttattacttcctattctttg 337670  T
Q  121 actacacaaatcattttgtatacaaatattttccaagctcatcgatcaattcctagagttta 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  337671 actacacaaatcattttgtatacaaatattttccaagctcatcaatcaactcctagagttta 337732  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 43408359 - 43408313
Alignment:
Q  136 ttgtatacaaatattttccaagctcatcgatcaattcctagagttta 182  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  43408359 ttgtatacaaatattttccaagctcatcaatcaattcctagagttta 43408313  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 37667742 - 37667704
Alignment:
Q  144 aaatattttccaagctcatcgatcaattcctagagttta 182  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  37667742 aaatattttccaagctcatcaatcaattcctagagttta 37667704  T

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Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 68810 - 68970
Alignment:
Q  21 ataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcagattgttccctctcacaatattctcttattacttcttattctttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  68810 ataattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgttccctctcgcaatattctcttattacttcctattctttg 68909  T
Q  121 actacacaaatcattttgtatacaaatattttccaagctcatcgatcaattcctagagttta 182  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  68910 actacacaaatcattttgtatacaaatatttt-caagctcatcaatcaattcctagagttta 68970  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 40458553 - 40458599
Alignment:
Q  136 ttgtatacaaatattttccaagctcatcgatcaattcctagagttta 182  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  40458553 ttgtatacaaatattttccaagctcatcaatcaattcctagagttta 40458599  T

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