View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_7 (Length: 565)
Name: NF11453A_low_7
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_7 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 16803490 - 16804028
Alignment:
| Q |
13 |
aatatgaaaattttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaagaccaatatttccggatacatatccctcaagtgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803490 |
aatatgaaaattttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaagaccaatatttccggatacatatccctcaagtgg |
16803589 |
T |
|
| Q |
113 |
acccttatttctatggccgcatcctattacaatatttttaaatgagataggagggtcattattagagttcaaagtaagagtgtctatactaagatctcct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803590 |
acccttatttctatggccgcatcctattacaatatttttaaatgagataggagtgtcattattagagttcaaagtaagagtgtctatactaagatctcct |
16803689 |
T |
|
| Q |
213 |
tgggaatatgcctcaccaccatatgtaaaactatattcacatacctttttatcatcggaagagcaatgcgaattttctacatttttgcatttgggaggag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
16803690 |
tgggaatatgcctcaccaccatatgtaaaactatattcacatacctttttatcatcggaagagcaatgcgtattttctacatttttgcatttgggagaag |
16803789 |
T |
|
| Q |
313 |
agcaaggaatggatttattggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtttacacggattacattgaaaccaaatatt |
412 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803790 |
agcaaggaatggttttataggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtttacacggattacattgaaaccaaatatt |
16803889 |
T |
|
| Q |
413 |
atcattggccgtatccataacaccgtaaagttgaaatggtggggtaccaattaaaaaacttattatataaccatcacccataaacggtgatacaacaata |
512 |
Q |
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| T |
16803890 |
atcattggccgtatccataacaccgtaaagttgaaatggtggggtaccaattaaaaaacttattatataaccatcacccataaacggtgatacaacaata |
16803989 |
T |
|
| Q |
513 |
tttggcaccttatttgggggaaaagaaaacacatggtta |
551 |
Q |
| |
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| T |
16803990 |
tttggcaccttatttgggggaaaagaaaacacatggtta |
16804028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 19573753 - 19573222
Alignment:
| Q |
13 |
aatatgaaaattttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaagaccaatatttccggatacatatccctcaagtgg |
112 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| || ||||| ||||| | ||| |
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| T |
19573753 |
aataagaaaattttccaccaattgaagaattcaattgggatataaaagacaaaggcccgcgtgcaaggccaatatttcctgagacatacccctctaatgg |
19573654 |
T |
|
| Q |
113 |
acccttatttctatggccgcatcctattacaatatttttaaatgagataggagggtcattattagagttcaaagtaagagtgtctatactaagatctcct |
212 |
Q |
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|||| ||||||||| || ||||| || ||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||| | || |||||||||| |
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| T |
19573653 |
cccctgatttctatgcccacatccaatcacaatatttttgaatgagataggagtgccattgttagagttcaaagtaagagtgtcgacaccaagatctcct |
19573554 |
T |
|
| Q |
213 |
tgggaatatgcctcaccaccatatgtaaaactatattcacatacctttttatcatcggaagagcaatgcgaattttctacatttttgcatttgggaggag |
312 |
Q |
| |
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|| ||||| | || ||||||||||| | |||||||||||| ||||| ||| | ||||||||||||| | ||| ||||||||||| |||||| || |
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| T |
19573553 |
tgcgaata---cccatcaccatatgtatatttatattcacatatcttttaatctttggaagagcaatgccca---tctgcatttttgcatatgggagaag |
19573460 |
T |
|
| Q |
313 |
agcaaggaatggatttattggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtttacacggattacattgaaaccaaatatt |
412 |
Q |
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||| ||||||| ||| | |||||| ||||||||||||| |||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| || |
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| T |
19573459 |
tgcatggaatggttttgtaggttgatgattttgaagggtgaaacattggtgatgtttggtttaaacatggtttgcacggcttacattgaaaccaaatgtt |
19573360 |
T |
|
| Q |
413 |
atcattggccgtatccataacaccgtaaagttgaaatggtggggtaccaattaaaaaacttattatataaccatcacccataaacggtgatacaacaata |
512 |
Q |
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|||||| | ||||| |||| || ||||||||||||||| |||||||||||| || |||| |||| ||| ||| |||||||||| | ||||| | | | |
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| T |
19573359 |
atcatttcctgtatcaataagactgtaaagttgaaatggaggggtaccaattgaataactcattacatatccagcacccataaatgatgataaaggcaca |
19573260 |
T |
|
| Q |
513 |
tttggcaccttatttgggggaaaagaaaacacatggtt |
550 |
Q |
| |
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| | | | |||||||||| |||||||||||||||||| |
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| T |
19573259 |
tcttgaattttatttggggaaaaagaaaacacatggtt |
19573222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 259 - 460
Target Start/End: Original strand, 15421 - 15622
Alignment:
| Q |
259 |
ttttatcatcggaagagcaatgcgaattttctacatttttgcatttgggaggagagcaaggaatggatttattggttgaagattttgaagggtcaaacat |
358 |
Q |
| |
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|||||| || |||||||||||| |||||| | | ||| ||| |||||| ||||||| ||||| ||||| |||||||||||||||||||| |||||| |
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| T |
15421 |
ttttatgattggaagagcaatggctattttcgaaacgtttacatgtgggagaagagcaatgaatgtttttataggttgaagattttgaagggttaaacat |
15520 |
T |
|
| Q |
359 |
tggtgatgttgtgttgaaacatggtttacacggattacattgaaaccaaatattatcattggccgtatccataacaccgtaaagttgaaatggtggggta |
458 |
Q |
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||| |||||| ||| ||||||||||||||||| ||||||||||||||||| |||| | | ||||||||| |||| ||||| || |||||||| ||| |
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| T |
15521 |
tggagatgtttggtttaaacatggtttacacggcttacattgaaaccaaattccatcactacctgtatccatagcaccataaagctggaatggtggagta |
15620 |
T |
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| Q |
459 |
cc |
460 |
Q |
| |
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|| |
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| T |
15621 |
cc |
15622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 15172 - 15237
Alignment:
| Q |
13 |
aatatgaaaattttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaa |
78 |
Q |
| |
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|||| |||||||||||| |||||||||| ||||||| ||||| || || |||||||| ||||||| |
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| T |
15172 |
aataagaaaattttccattaatcgaagaactcaattgagatattaacgataaaggtccgcgtccaa |
15237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 464
Target Start/End: Complemental strand, 8894205 - 8894073
Alignment:
| Q |
332 |
ggttgaagattttgaagggtcaaacattggtgatgttgtgttgaaacatggtttacacggattacattgaaaccaaatattatcattggccgtatccata |
431 |
Q |
| |
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|||||| ||||||||||||| ||| || || |||||| ||| |||||||||||||| || |||||||||||||| || ||| || | ||||||| | |
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| T |
8894205 |
ggttgatgattttgaagggttaaatatcggagatgtttggtttaaacatggtttacaaggcttacattgaaaccatattccgtcactgcctgtatccaca |
8894106 |
T |
|
| Q |
432 |
acaccgtaaagttgaaatggtggggtaccaatt |
464 |
Q |
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||||| ||||| |||||||| |||||||||||| |
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| T |
8894105 |
acaccataaagctgaaatggaggggtaccaatt |
8894073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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