View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_701 (Length: 203)
Name: NF11453A_low_701
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_701 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 32879500 - 32879342
Alignment:
| Q |
20 |
acattatagagagctatagactgccttgctctacggatacattggtttgttccctcattaggaacaagttcttcatccaaatttgaatacctaatattag |
119 |
Q |
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| T |
32879500 |
acattatagagagctcta--ctgccttgctctacggatacattggttt-ttccctcattaggaacaagatcttcatccaaatttgaatacctaatagtag |
32879404 |
T |
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| Q |
120 |
ttgtgtgttttaagaaaaaagatattttattttagattatgctaactagtgctcttaagaat |
181 |
Q |
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| T |
32879403 |
ttgtgtgttttaagaaaaaagatattttatgttaggttatgttaacaagtgctcttaagaat |
32879342 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 32882282 - 32882213
Alignment:
| Q |
45 |
ttgctctacggatacattggtttgttccctcattaggaacaagttcttcatccaaatttgaatacctaata |
115 |
Q |
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| T |
32882282 |
ttgctctacgg-tacattggtttgttccttcgttaggaacgagatcttcatccaaatttgaatacctaata |
32882213 |
T |
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