View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_702 (Length: 203)
Name: NF11453A_low_702
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_702 |
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Alignment Details
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 31191150 - 31191065
Alignment:
| Q |
101 |
ccttttttaaggaatgttcatatagcttaaaataattgtccct-nnnnnnnctttttgtgttggtaactcttttaacatcgatatt |
185 |
Q |
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| T |
31191150 |
ccttttttaaggaatgttcatatagcttaaaataattgtccctaaaaaaaactttttgtgttggtaactcttttaacatggatatt |
31191065 |
T |
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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 31191231 - 31191181
Alignment:
| Q |
20 |
cacatagattacaccaaagattatacattttgttcaaaacttgtaattttg |
70 |
Q |
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| T |
31191231 |
cacatagattacaccaaagattatacattttgttcaaaacttgtaattttg |
31191181 |
T |
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