View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_703 (Length: 202)
Name: NF11453A_low_703
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_703 |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 53391601 - 53391663
Alignment:
| Q |
30 |
gcctaaagtacacaacaatatgttcactagtaagttcaatcagcacaacaccaaaaccatgaa |
92 |
Q |
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| T |
53391601 |
gcctaaagtacacaacaatatgtccactaataagttcaattagcacaaccccaaaaccatgaa |
53391663 |
T |
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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 1895908 - 1895968
Alignment:
| Q |
31 |
cctaaagtacacaacaatatgttcactagtaagttcaatcagcacaacaccaaaaccatgaa |
92 |
Q |
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| T |
1895908 |
cctaaagtaca-aacaatatgttcactagtaagttcaatcagcacaagactaaaaccatgaa |
1895968 |
T |
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