View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_71 (Length: 411)
Name: NF11453A_low_71
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 405
Target Start/End: Complemental strand, 43427359 - 43426950
Alignment:
| Q |
25 |
gcctctttgtatgctcccaaatatttatgaatatatgctacaccaattaatctactgaaatcccccatcaaaagcaggagcccaataatcagctccattt |
124 |
Q |
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| T |
43427359 |
gcctctttgtatgctcccaaatatttatgaatatatgctacaccaattaatctactgaaatcccccaccaaaagcaggagcccaataatcagctccattg |
43427260 |
T |
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| Q |
125 |
tcacttccaacttgcattgtgcatgacactggaaccaaacacaatcctctgctcctcaggtctttcttttctttttcttcacagacctattttacaata- |
223 |
Q |
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| T |
43427259 |
tcacttccaacttgcattgtgcatgacactggaaccaaacacaatcctctgctcctcaggtctttcttttctttttcttcacagacctaatttacaatac |
43427160 |
T |
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| Q |
224 |
--------------------acaaattattgacggtgttcaagcacatttatacacccaacagtcagggggacgtga--------gcaaacaacttcaat |
295 |
Q |
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| T |
43427159 |
agtcaaaattcacattatttacaaattattgacggtgttcaagcacatttatacacccaacagtcagggagatttcaaataaactacaaacaacttcaat |
43427060 |
T |
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| Q |
296 |
acacgcaacaattacctgttcactaactgcccttctcttcaaacagttttcattcagcagctataaccataaagaagnnnnnnntacaatgagaatttga |
395 |
Q |
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| T |
43427059 |
acacgcaacaattacctgttccctaactgcctttctcttcagacagttttcattcagcagctataaccataaagaagaaaaaaatacaatgagaatttga |
43426960 |
T |
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| Q |
396 |
ttcatatcag |
405 |
Q |
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| T |
43426959 |
ttcatctcag |
43426950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 43440398 - 43440352
Alignment:
| Q |
322 |
ctgcccttctcttcaaacagttttcattcagcagctataaccataaa |
368 |
Q |
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| T |
43440398 |
ctgcctttctattcaaacagttttcattcagcagctataaccataaa |
43440352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 43742930 - 43742884
Alignment:
| Q |
322 |
ctgcccttctcttcaaacagttttcattcagcagctataaccataaa |
368 |
Q |
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| T |
43742930 |
ctgcctttctattcaaacagttttcattcagcagctataaccataaa |
43742884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 43665324 - 43665246
Alignment:
| Q |
104 |
gcccaataatcagctccattttcacttccaacttgcattgtgcatgacactggaaccaaacacaatcctctgctcctca |
182 |
Q |
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| T |
43665324 |
gcccaataatcagctccattttcacttccaacatgttgtgtgcatgacactggaaccaagcacaaccctctactcctca |
43665246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 33176035 - 33176130
Alignment:
| Q |
98 |
gcaggagcccaataatcagctccattttcacttccaacttgcattgtgcatgacactggaaccaaacacaatcctctgctcctcaggtctttcttt |
193 |
Q |
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||||| |||||||||||||||||||| ||| | |||||||| | ||| |||||||||||||| | |||||| ||||| ||| | ||||| |||||| |
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| T |
33176035 |
gcaggtgcccaataatcagctccattgtcattcccaacttgtagtgtacatgacactggaacaagacacaaacctctactctttaggtccttcttt |
33176130 |
T |
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