View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_712 (Length: 201)
Name: NF11453A_low_712
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_712 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 1676249 - 1676442
Alignment:
| Q |
8 |
cgaagaatattgaaacaagcgatgattatataaaggttttttccccatatttttattttgtttaaagaactatactaaataaactaattatgttacaaca |
107 |
Q |
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| T |
1676249 |
cgaagaatattgaaacaagtgatgattatatagaggttttttccccatatttttattttgtttaaagaactatactaaataaactaattatgttacaaca |
1676348 |
T |
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| Q |
108 |
ataaagaacaataaaactaattaagcaagaactcaacttaataaaaacaccacgaaaacattatgttacaactgaaaagaacaacctcgagatg |
201 |
Q |
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| T |
1676349 |
ataaagaacaataaaactaattaatcaagaactcaacttaataaaaacaccacgaaaacattatattacaactgaaaagaacaacctcgagatg |
1676442 |
T |
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