View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_716 (Length: 201)
Name: NF11453A_low_716
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_716 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 6e-76; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 41985687 - 41985852
Alignment:
| Q |
21 |
cctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41985687 |
cctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagt |
41985786 |
T |
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| Q |
121 |
catatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat |
183 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
41985787 |
catatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat |
41985852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 41980913 - 41981073
Alignment:
| Q |
21 |
cctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagt |
120 |
Q |
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|||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| |
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| T |
41980913 |
cctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagt |
41981012 |
T |
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| Q |
121 |
catatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc |
181 |
Q |
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||| ||||| |||||||| || |||| ||||||||||||||||||||||| |||||||| |
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| T |
41981013 |
gataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc |
41981073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 9695662 - 9695616
Alignment:
| Q |
32 |
caacttgacccatttcttctccttctcatcaagtctgaacacatcaa |
78 |
Q |
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| T |
9695662 |
caacttgacccacttcttctccttctcatcaagcctgaatacatcaa |
9695616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 9329891 - 9329952
Alignment:
| Q |
17 |
atctcctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa |
78 |
Q |
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|||||||||| |||||||||||||||| | ||||| ||||||||||| || |||||||||| |
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| T |
9329891 |
atctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa |
9329952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
| Q |
30 |
gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa |
78 |
Q |
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|||||||||||||| |||||||| ||||||||||| ||||| ||||||| |
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| T |
9686751 |
gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa |
9686799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 13170741 - 13170579
Alignment:
| Q |
21 |
cctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagt |
120 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| || |
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| T |
13170741 |
cctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgagggt |
13170642 |
T |
|
| Q |
121 |
catatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat |
183 |
Q |
| |
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|||| ||||| |||||||||||||||| ||| ||||| |||| |||||||||||||||||||| |
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| T |
13170641 |
catagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat |
13170579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 44688842 - 44688680
Alignment:
| Q |
21 |
cctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagt |
120 |
Q |
| |
|
|||||||||| ||||| ||||||||||| | |||||||| || |||||||||||||| || |||||||||||| ||||| ||||||| |||||||| |
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| T |
44688842 |
cctaaactcgttaactttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagt |
44688743 |
T |
|
| Q |
121 |
catatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat |
183 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
44688742 |
catagatgtccactagcaacaactcaccttcactctctaccaggaattttatgtcccctccat |
44688680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 18991335 - 18991422
Alignment:
| Q |
96 |
ccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat |
183 |
Q |
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|||||||| ||||||||||| |||||| | ||||| |||||||||||||||| |||| |||||||| ||||||||| |||||||||| |
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| T |
18991335 |
ccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccat |
18991422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 450172 - 450111
Alignment:
| Q |
17 |
atctcctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa |
78 |
Q |
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|||||||||| || |||||||||||| || ||||||||||||||||| || |||||||||| |
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| T |
450172 |
atctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaa |
450111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 7025811 - 7025854
Alignment:
| Q |
17 |
atctcctaaactcgccaacttgacccatttcttctccttctcat |
60 |
Q |
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|||||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
7025811 |
atctcctaaactcgtcaacttcacccacttcttctccttctcat |
7025854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 20694340 - 20694304
Alignment:
| Q |
39 |
acccatttcttctccttctcatcaagtctgaacacat |
75 |
Q |
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||||||||||||||||| |||||||| |||||||||| |
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| T |
20694340 |
acccatttcttctccttttcatcaagcctgaacacat |
20694304 |
T |
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