View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_72 (Length: 410)
Name: NF11453A_low_72
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 67 - 405
Target Start/End: Original strand, 31251816 - 31252154
Alignment:
| Q |
67 |
taacattaaacctgttattttacatactaagtcataaaaaggaaagaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactcta |
166 |
Q |
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| T |
31251816 |
taacattaaacctgttattttacatactaagtcataaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattcta |
31251915 |
T |
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| Q |
167 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
266 |
Q |
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| T |
31251916 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
31252015 |
T |
|
| Q |
267 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatc |
366 |
Q |
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| T |
31252016 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatc |
31252115 |
T |
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| Q |
367 |
agggccaacattaatttgtgatgcaggagagatggattt |
405 |
Q |
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| T |
31252116 |
agggccaacattaatttgtgatgcaggagagatggattt |
31252154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 78 - 405
Target Start/End: Complemental strand, 25815317 - 25814990
Alignment:
| Q |
78 |
ctgttattttacatactaagtcataaaaaggaaagaaa-caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattc |
176 |
Q |
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| T |
25815317 |
ctgttcttttacatactaagtcataaaaaggaaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattc |
25815218 |
T |
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| Q |
177 |
atacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatgga |
276 |
Q |
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| T |
25815217 |
atacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggg |
25815118 |
T |
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| Q |
277 |
gtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgagaattatcagggccaaca |
376 |
Q |
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| T |
25815117 |
gtcattttatacatggtaatgaaatgagataagaatcaa-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaaca |
25815019 |
T |
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| Q |
377 |
ttaatttgtgatgcaggagagatggattt |
405 |
Q |
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| T |
25815018 |
ttaatttgtaatgcaagagagatggattt |
25814990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 261 - 405
Target Start/End: Complemental strand, 23052912 - 23052768
Alignment:
| Q |
261 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
360 |
Q |
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|||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
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| Q |
361 |
attatcagggccaacattaatttgtgatgcaggagagatggattt |
405 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagatggattt |
23052768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 23052961 - 23052912
Alignment:
| Q |
180 |
cacaaaagtggtgatttattaggggtagcattccaaaactgcataaaactt |
230 |
Q |
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| T |
23052961 |
cacacaagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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