View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_76 (Length: 405)
Name: NF11453A_low_76
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_76 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 3 - 405
Target Start/End: Complemental strand, 19460853 - 19460451
Alignment:
| Q |
3 |
gaacaaggggaagaggatttgatctatttcggaaggagaatattgggagagaaggaggaactctacttcacttgtaataaaaaattcacatcgacgcatg |
102 |
Q |
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| T |
19460853 |
gaacaaggggaagaggatttgatctatttcagaaggagaatattggaagagaaggaggaactctacttcacttgtaataaaaaattcacatcgacacatg |
19460754 |
T |
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| Q |
103 |
tttgtaaaacagcatttcaaggtgatgattgtgaaggatttagagggagtagacggggggagctagagaaaaatggactcgagggttctttgaatgagag |
202 |
Q |
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| T |
19460753 |
tttgtaaaacagcatttcaaggtgatgattgtgaaggaattagagggagtagaaggggggagctagagaaaaatggactcgagggttctttgaatgagag |
19460654 |
T |
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| Q |
203 |
aatggtgaagttagacattcaaagcatggtagggcttactccggagagagaactcaaacttggggtacttttctgaaaagtgtggtgacaatcctaattg |
302 |
Q |
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| T |
19460653 |
aatggtgaagttagacattcaaagcatggtagggcttactccggagagagaactcaaacttggggtacttttctgaaaagtgtggtgacaatcctaattg |
19460554 |
T |
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| Q |
303 |
acagtggactagaggagcaacccacaactttatttctcagcgggtggtgagagatctcaacataccagtagagaaaattcctacaatcctacctgtcggg |
402 |
Q |
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| T |
19460553 |
acagtggactagtggagcaacccacaactttatttctcagcgggtggtgagagatctcaacataccagtagagaaaattcctacaatcctacctatcggg |
19460454 |
T |
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| Q |
403 |
tga |
405 |
Q |
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| T |
19460453 |
tga |
19460451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 10192773 - 10193115
Alignment:
| Q |
52 |
agaaggaggaactctacttcacttgtaataaaaaa-ttcacatcgacgcatgtttgtaaaacagcatttcaaggtgatgattgtgaaggat---ttagag |
147 |
Q |
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| T |
10192773 |
agaaggaggaactctgcttcacttgtgataaaaaaattcacaccttcacatgtttgtaaaaca---tttcatggtgatgattgtgaaggaagaattcgag |
10192869 |
T |
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| Q |
148 |
ggagtagacgggggg-agctagagaaaaatg---gactcgagggttctttgaatgagagaatggtgaagttagacattcaaagcatggtagggcttactc |
243 |
Q |
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| T |
10192870 |
ggagtagaagggggggagctagagcaaaatgaaggagttgag--ttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttactc |
10192967 |
T |
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| Q |
244 |
cggagagagaactcaaac-ttggggtacttttctgaaaagtgtggtgacaatcctaattgacagtggactagaggagc-aacccacaact----ttattt |
337 |
Q |
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| T |
10192968 |
cgaagagggcactcaaactttggggtacttttctgaaaagtgcggtgacaatcctaattaccagtggaatagtgaagcaaacccacaactttaattattt |
10193067 |
T |
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| Q |
338 |
ctcagcgggtggtgagagatctcaacataccagtagagaaaattccta |
385 |
Q |
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| T |
10193068 |
ctcagcaattggtcagagatctcagcataccagtagagtacattccta |
10193115 |
T |
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