View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_8 (Length: 557)
Name: NF11453A_low_8
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 14 - 557
Target Start/End: Original strand, 6538609 - 6539151
Alignment:
| Q |
14 |
acaaaacaactttctctctatgtaaaacttcatgcatctatcaccaatcaattactctgctactactttcaaacacttcaattttcactctttcatggat |
113 |
Q |
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| T |
6538609 |
acaaaacaactttctctctatgtacaacttcatgcatctatcaccaatcaattactctgctactactttcaaacacttcaattttcactctttcatggat |
6538708 |
T |
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| Q |
114 |
ttttatagttttaacacaatgttatattatactattgaaatcaatgtaaactgtaagtgaccannnnnnnaagaaaagtgaactcatttcgtgacacaat |
213 |
Q |
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| T |
6538709 |
ttttatagttttaacacaatgttatattatactattgaaatcaatgtat-ctgtaagtgaccatttttttaagaaaagtgaactcatttcgtgacacaat |
6538807 |
T |
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| Q |
214 |
attagcaaaaaggtacatgtaccttttttattacggaggaagtatatgttatgagttatgacttacactcatgacatgagccgcatgacttcattatcac |
313 |
Q |
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| T |
6538808 |
attagcaaaaaggtacatgtactttttttattacggaggaagtatatgttatgagttatgacttacactcatgacatgagccacatgacttcattatcac |
6538907 |
T |
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| Q |
314 |
atttaacattttatctactctttcttctttcaagtcttcactaatctttcactattcaatgatgtactctcaattgttatgatttaagctatgaaaagtg |
413 |
Q |
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| T |
6538908 |
atttaacattttatctactctttcttctttgaagtcttcactaatctgtcactattcaatggtgtactctcaattgttatgatttaagctatgaaaagtg |
6539007 |
T |
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| Q |
414 |
tcaaacttaaaagactaatctattatataaaactctcatagcttaataacacaataaaaagaaattatacacaagactacaaccaatgtattttcttaaa |
513 |
Q |
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| T |
6539008 |
tcaaacttaaaagactaatctattatataaaactctcatagcttaataacacaataaaaagaaattatacacaagactacaaccaatgtattttcttaaa |
6539107 |
T |
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| Q |
514 |
tgagacttatagtaaagccaaaggaggagtagttgaactattat |
557 |
Q |
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| T |
6539108 |
tgagacttatagtaaagccaaaggaggagtagttgaactattat |
6539151 |
T |
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