View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_80 (Length: 402)
Name: NF11453A_low_80
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 7733625 - 7734004
Alignment:
| Q |
18 |
acatcatgtacaacacctcaatgactaaacaatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagaccttcac |
117 |
Q |
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| T |
7733625 |
acatcatgtacaacgcttcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagaccttcac |
7733724 |
T |
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| Q |
118 |
taacttccagacgaattcttaccaacgcctagaaaggcatcattcattacaaaagcaatgtacaccatttctattatttcaatacctcacactctttgtt |
217 |
Q |
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| T |
7733725 |
taacttccagacgacttcttaccaatgcctagaaaggcctcattcattacaaaagcaatgtacaccatttctattatttcaatgcctcacactctttgtt |
7733824 |
T |
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| Q |
218 |
ttcatattgacttgagtatccatcttagttttattttggagaggatataatttagtttttggttattaactttgtgtttataaaatattataa-nnnnnn |
316 |
Q |
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| T |
7733825 |
ttcatattgacttgagtatccatcttagttttattttggagcggatgtaatttagtttttggttattaactttgtgtttataacatattataattttttt |
7733924 |
T |
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| Q |
317 |
naaacaatacaagcggaaagacggacacctgagtatctatctttccgctctttttattgcgtcaatgcgtataaattttc |
396 |
Q |
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| T |
7733925 |
taaacaatacaagcggaaagacggacacctgaatatccatctttctgctctttttattgcgtcaatgcgtataaattttc |
7734004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 48458269 - 48458236
Alignment:
| Q |
360 |
tccgctctttttattgcgtcaatgcgtataaatt |
393 |
Q |
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| T |
48458269 |
tccgctctttttattgcgttaatgcgtataaatt |
48458236 |
T |
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