View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_81 (Length: 400)
Name: NF11453A_low_81
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 392
Target Start/End: Original strand, 36422632 - 36423003
Alignment:
| Q |
21 |
ggtatagcactagttatacttgctacctggtttcaccttccatcatcattcaacaaagaagctctagactgcaacatcttctctggatggtgcacctcaa |
120 |
Q |
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| T |
36422632 |
ggtatagcactagttatacttgctacctggtttcaccttccttcatcattcaacaaagaagctctagactgcaacatcttctctggatggtgcacctcaa |
36422731 |
T |
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| Q |
121 |
agaaccgttttcaatcttcaaatccaatccacaaaccatccttctccactcgccatcaacaaccaaaccatgaatccgatgaacctcgccaccctttaga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422732 |
agaaccgttttcaatcttcaaatccaatccacaaaccatccttctccactcgccgtcaacaaccaaaccatgaatccgatgaacctcgccaccctttaga |
36422831 |
T |
|
| Q |
221 |
ccctctaaccatccaagaattcaacaaagttcgtgcgatcctctcgacacaccctctttttaagtcctcaaacagttacactctcaattccattgttcta |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422832 |
ccctctaaccatccaagaattcaacaaagttcgtgcgatcctctcgacacaccctctttttaagtcctcaaacagttacactctcaattccattgttcta |
36422931 |
T |
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| Q |
321 |
gaagaaccagacaaagaacttgtcctcaaatggaaaaatggtcaaccattacttcctaggaaagcctctgtg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422932 |
gaagaaccagacaaagaacttgtcctcaaatggaaaaatggtcaaccattacttcctaggaaagcctctgtg |
36423003 |
T |
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